Plant FIBer expression Database

Lus10018822 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G00290 527 / 0 Mechanosensitive ion channel protein (.1)
AT4G00234 266 / 1e-85 unknown protein
AT5G10490 73 / 2e-13 MSL2 MSCS-like 2 (.1.2.3)
AT1G58200 72 / 4e-13 MSL3 MSCS-like 3 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005121
[exp]
786 / 0 AT4G00290 446 / 1e-153 Mechanosensitive ion channel protein (.1)
Lus10009277
[exp]
76 / 4e-14 AT1G58200 710 / 0.0 MSCS-like 3 (.1.2)
Lus10002652
[exp]
67 / 2e-11 AT5G10490 780 / 0.0 MSCS-like 2 (.1.2.3)
Lus10012733
[exp]
58 / 2e-08 AT1G58200 630 / 0.0 MSCS-like 3 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G162100
[exp]
580 / 0 AT4G00290 578 / 0.0 Mechanosensitive ion channel protein (.1)
Potri.014G088200
[exp]
560 / 0 AT4G00290 580 / 0.0 Mechanosensitive ion channel protein (.1)
Potri.002G105900
[exp]
72 / 5e-13 AT1G58200 729 / 0.0 MSCS-like 3 (.1.2)
Potri.005G154000
[exp]
69 / 6e-12 AT1G58200 734 / 0.0 MSCS-like 3 (.1.2)
Potri.007G011100
[exp]
67 / 1e-11 AT5G10490 714 / 0.0 MSCS-like 2 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00924 MS_channel Mechanosensitive ion channel
Representative CDS sequence
>Lus10018822 pacid=23144656 polypeptide=Lus10018822 locus=Lus10018822.g ID=Lus10018822.BGIv1.0 annot-version=v1.0
ATGAGACTTCGTGGTTCGATTAACTCTGCCTGGACATGGCAGCAGCAGGTGCTTCTTCAGTCGCGCAGTTACTCTACTACACTCGCGAGAGACGCTACTA
GATCTCTTTCCAGATCACTCTTAGCTTCTCCGCCTCGTCATAATCATAATCATGTGCCTGATTTCAAACTGGTTAGATGTTTGGCAAACGGAAATGAGTT
GTCTAAGTCCGACTCTTATCGGAGTTCAAAATCCTTCAACTCTATTTCTTCACCCGCATTGCTTGGTAGAAGAACTATTGCTTTTTCCTCGTTTAGTCCT
TTGTTGATTCAGCGCTCTTATTTCTCGACTTCCGGTGGCAAACCTGATAAACCTATCGGTGACCTTTCTGTTGGATCTGGAACTGATGTGGTTGATGCCA
GCAATGGAATCGCTGGTGGTGATTGGATGGATAGAATTAAAGATGTATGGCACAATGCAACTGATGCTTTCCACTATACAACAGAAAAGGCTAAGGAGAC
CTCTGATGCATTAACGCCTCATGTTCAGCATGTTCTTGACTCATATCCTTATCTGAACACTGTGATTGTTCCAGTTAGTTACACTGTAGCTGGCACTGTC
TTGGCTTGGGTCGTAATGCCCAAACTCTTGAGGAGATTTCAAAGGTTTGCTATGCAAAGTCCTGGTGGAGTACTATACACCAGCATAGTCGGTGAAGTAG
TTCCTTATGAGAAAAGCGTCTGGGGTGCTCTGGAGGATCCTGTTCGTTACTTGATTACCTTCATGGCATTTTCACAAATTTGTACGATGGTGGCTCCAAC
TACTGTGGCAGCGCAATACCTTGGACAAGTGTGGAAGGGTGCAATCACGATTTCTTTAGTATGGTTTCTTTATCGCTGGAAGACCAATTTACTCAGTCGT
GCAATGGCTTCTCATACTCTGGCAATGGCTGACCGAGAGAAGTGGTTAACTTTCGACAAAGTTTCTTCTATTGGGCTGTTTGGTATTGGCCTTACAGCTT
TTGCTGAAGCATCAGGAGTAGCTGTGCAGTCTATTTTGACAGTGGGGGGAATTGGAGGAGTGGCTACTGCATTTGCTGCTAGAGATGTTCTTGGAAATGT
TCTTAGCGGTATATCTATGCAAGCTTCGCACCCTTTTTCACTTGGAGATACCATAAAGGCAAGCGGAGAAAGTCTTGCTGGTAATATTGAAGGTCAAGTG
GTTGAAATGGGACTAACTACAACAATGTTACTAAATTCTGAGAAGTTCCCTGTCATAGTTCCAAATTCGTTGTTTTCTAGTCAGGTGATCGTAAACAAGT
CTCGTGCTCACTTTCGGGCCATGGTAAAACAAGTTCCTATAGTGGTTGAGGATCTTGACAAGATTGGAAAGATATCGATGGAGATTGAGAGTATGTTGAA
GTCAAATCCAAAGGTTTTCTTGATGAAGGAAAAACCTTACTGTTTCTTGTCTAGAGTTGAAAGGTCTTTTGCGGAATTGACTCTCGGATGCAATCTCAAT
AACATGAGTAAACATGAATGCTATGCTGCTGAACAAGAGATATTACTGGAATCTGCTCGCATCATCAAGGAGAATGGTGCCAGCTTGGGCAGCACTTGGC
AATCATGA
AA sequence
>Lus10018822 pacid=23144656 polypeptide=Lus10018822 locus=Lus10018822.g ID=Lus10018822.BGIv1.0 annot-version=v1.0
MRLRGSINSAWTWQQQVLLQSRSYSTTLARDATRSLSRSLLASPPRHNHNHVPDFKLVRCLANGNELSKSDSYRSSKSFNSISSPALLGRRTIAFSSFSP
LLIQRSYFSTSGGKPDKPIGDLSVGSGTDVVDASNGIAGGDWMDRIKDVWHNATDAFHYTTEKAKETSDALTPHVQHVLDSYPYLNTVIVPVSYTVAGTV
LAWVVMPKLLRRFQRFAMQSPGGVLYTSIVGEVVPYEKSVWGALEDPVRYLITFMAFSQICTMVAPTTVAAQYLGQVWKGAITISLVWFLYRWKTNLLSR
AMASHTLAMADREKWLTFDKVSSIGLFGIGLTAFAEASGVAVQSILTVGGIGGVATAFAARDVLGNVLSGISMQASHPFSLGDTIKASGESLAGNIEGQV
VEMGLTTTMLLNSEKFPVIVPNSLFSSQVIVNKSRAHFRAMVKQVPIVVEDLDKIGKISMEIESMLKSNPKVFLMKEKPYCFLSRVERSFAELTLGCNLN
NMSKHECYAAEQEILLESARIIKENGASLGSTWQS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G00290 Mechanosensitive ion channel p... Lus10018822
[exp]
0 1
AT3G13226 regulatory protein RecX family... Lus10032955
[exp]
1.4 0.8457
AT1G18640 PSP 3-phosphoserine phosphatase (.... Lus10034686
[exp]
3.0 0.8339
AT3G28760 unknown protein Lus10005250
[exp]
3.2 0.8509
AT5G02280 SNARE-like superfamily protein... Lus10010836
[exp]
6.0 0.8178
AT3G12600 ATNUDT16 nudix hydrolase homolog 16 (.1... Lus10008660
[exp]
8.9 0.7492
Lus10005391
[exp]
10.5 0.8305
AT1G08220 unknown protein Lus10021398
[exp]
10.9 0.8200
AT3G12170 Chaperone DnaJ-domain superfam... Lus10026315
[exp]
11.0 0.8184
AT5G20060 alpha/beta-Hydrolases superfam... Lus10043294
[exp]
11.0 0.8146
AT1G18070 Translation elongation factor ... Lus10041996
[exp]
13.1 0.7628

Lus10018822 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.