Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00300 374 / 1e-125 fringe-related protein (.1.2) AT5G24010 281 / 6e-86 Protein kinase superfamily protein (.1) AT3G46290 247 / 2e-73 HERK1 hercules receptor kinase 1 (.1) AT5G61350 238 / 7e-70 Protein kinase superfamily protein (.1) AT4G39110 228 / 6e-66 Malectin/receptor-like protein kinase family protein (.1) AT2G21480 226 / 2e-65 Malectin/receptor-like protein kinase family protein (.1) AT5G59700 220 / 2e-63 Protein kinase superfamily protein (.1) AT5G54380 206 / 3e-58 THE1 THESEUS1, protein kinase family protein (.1) AT2G39360 184 / 1e-50 Protein kinase superfamily protein (.1) AT2G23200 171 / 5e-46 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005120 [exp] 768 / 0 AT4G00300 413 / 6e-141 fringe-related protein (.1.2) Lus10027509 [exp] 290 / 2e-89 AT5G24010 996 / 0.0 Protein kinase superfamily protein (.1) Lus10039274 [exp] 286 / 9e-88 AT5G24010 997 / 0.0 Protein kinase superfamily protein (.1) Lus10021632 [exp] 242 / 5e-71 AT5G61350 971 / 0.0 Protein kinase superfamily protein (.1) Lus10028140 [exp] 240 / 9e-71 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10042844 [exp] 237 / 1e-69 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10000562 [exp] 230 / 1e-66 AT5G61350 965 / 0.0 Protein kinase superfamily protein (.1) Lus10028805 [exp] 224 / 2e-64 AT4G39110 1139 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10037887 [exp] 220 / 3e-63 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G088100 [exp] 516 / 0 AT4G00300 420 / 1e-143 fringe-related protein (.1.2) Potri.004G079700 [exp] 301 / 1e-93 AT5G24010 1031 / 0.0 Protein kinase superfamily protein (.1) Potri.017G143049 [exp] 300 / 5e-93 AT5G24010 1071 / 0.0 Protein kinase superfamily protein (.1) Potri.009G026600 [exp] 265 / 6e-80 AT3G46290 1093 / 0.0 hercules receptor kinase 1 (.1) Potri.001G234200 [exp] 258 / 2e-77 AT3G46290 1106 / 0.0 hercules receptor kinase 1 (.1) Potri.015G061700 [exp] 231 / 3e-67 AT5G61350 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.010G213200 [exp] 227 / 4e-66 AT3G46290 808 / 0.0 hercules receptor kinase 1 (.1) Potri.004G158700 [exp] 219 / 4e-63 AT4G39110 1199 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.009G120400 [exp] 213 / 8e-61 AT4G39110 1210 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.011G128000 [exp] 201 / 2e-56 AT5G54380 1231 / 0.0 THESEUS1, protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Lus10018823 pacid=23144725 polypeptide=Lus10018823 locus=Lus10018823.g ID=Lus10018823.BGIv1.0 annot-version=v1.0 ATGGGAACCCAACGTACAACCTACGCCTTTCTTCTCCTTGCCTTCTCTGCCGTCCTACTCTCCGCCCTCACCTCTGCTTTCTCCCCCGCCGACAACCACC TCATCAATTGCGGCTCCCCCGTAGACGCCGTCCTCCTCGACTCCCGCCGGTTCGTCTCCGATTTCCACTCTTCCCATCCCGCCACCCCGCTTCGCTGCTC CTCTCTAACCACTACCCTTGTAAATGAATCCCCCCAATCCGGATCGGATCAAATCTATCACACCGCTCGAGCTTTTAGGAAACCGACCAAATACGCGTTC AAGATCAGCCAGCCTGGAACTCACATGGTACGCCTCCATTTCGCCCCTTTCGTCTCCTCCAATCTGGATTTGTCCCAGTCCCGCTTCCACGTTCTGGTTG GAGATTACGTCGTCTTGACCAACTTTACTGCCTCCACAACCACTCTGGTTAAAGAGTATTTCATCTGGGTTAGTACGAACAAGCTTGTAATTTCGTTTGT GCCAACTGAAAAGGGGAAGTTAGGGTTTGTGAACGCAATAGAGGTCATCTCTGCTCCCCAAGATCTAATTGCTGACACGGCTACTCTCTTGACCGGCGGC AAGGCTGGTACTAAAATCCAAGGACTGAGTAAGCAAGGTCTCGAAACTGTGCACAGGGTGAACGTTGGAGGTCGGAAGGTGACTCCGTTTAACGATTCCG TGTGGAGAACTTGGATTCCGGATGATGGGTTCTTCAAATCGAGTGATGTTTCTAATAAGGTTTCTTTCAGTGGTAGGATTAACTACCAGGTCGGAGGGGC TAGCCGAGAAGTCTGCCCGGATTTTGTGTATAACAGTGCTAGAGTAATTGCTAGCAAGAATTCGTCAATTCCTGTGGCAAATATGACATGGGCGTTTCCG CTGACTGGAGGTTATAGGTATCTTGTAAGGTTGCACTTCTGTGACATTGCTAGCATATCCCTTGGGATGATCCGCTTTAATGTCTATATCAATGGCTATT TGGCTGAAGAGGATTTGGACCTCTCCTCGATTACTTACGAGCTGGCCTCTCCGTATTATGCTGATTTTGTGGTTGAAAAAAGTGAAGAGTCGGAGGGAGA CGTAAGCATCAGCGTCGGGCATTCTCACTCAAGCATGGCTTATGCTATTGATGGTATTTTGAACGGAGTTGAGATAATGAGGATGAATAACTCAATGGGT AGTTTCGACGGAAAGATTTGTGCAGGTATGGCCCTGAAGAGCTGGCCTAGACACCATTCTGGTGGCTTGTTCGCATTGGCTGCTGTGCTGTGCTTACTTC TTAGTGTTTCTCTGATCATGAGGAGGATGGTGACGATTAAGGACTCGTTTACATGGTCTAAACTTGCTACTACCGAAGTTCTAGAGGTGAATATGAAGGA TCGGTCATCATTGAATGGTAAGGTGTGA
AA sequence Show only first row Show all	>Lus10018823 pacid=23144725 polypeptide=Lus10018823 locus=Lus10018823.g ID=Lus10018823.BGIv1.0 annot-version=v1.0 MGTQRTTYAFLLLAFSAVLLSALTSAFSPADNHLINCGSPVDAVLLDSRRFVSDFHSSHPATPLRCSSLTTTLVNESPQSGSDQIYHTARAFRKPTKYAF KISQPGTHMVRLHFAPFVSSNLDLSQSRFHVLVGDYVVLTNFTASTTTLVKEYFIWVSTNKLVISFVPTEKGKLGFVNAIEVISAPQDLIADTATLLTGG KAGTKIQGLSKQGLETVHRVNVGGRKVTPFNDSVWRTWIPDDGFFKSSDVSNKVSFSGRINYQVGGASREVCPDFVYNSARVIASKNSSIPVANMTWAFP LTGGYRYLVRLHFCDIASISLGMIRFNVYINGYLAEEDLDLSSITYELASPYYADFVVEKSEESEGDVSISVGHSHSSMAYAIDGILNGVEIMRMNNSMG SFDGKICAGMALKSWPRHHSGGLFALAAVLCLLLSVSLIMRRMVTIKDSFTWSKLATTEVLEVNMKDRSSLNGKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00300			fringe-related protein (.1.2)		Lus10018823 [exp]	0	1
AT4G29780			unknown protein		Lus10011946 [exp]	1.0	0.9805
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Lus10034885 [exp]	2.0	0.9614
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Lus10033420 [exp]	2.4	0.9596
AT5G42570			B-cell receptor-associated 31-...		Lus10030043 [exp]	3.7	0.9291
AT3G21570			unknown protein		Lus10012773 [exp]	4.1	0.9217
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10032372 [exp]	4.5	0.9491
AT4G00300			fringe-related protein (.1.2)		Lus10005120 [exp]	7.3	0.9398
AT2G23810		TET8	tetraspanin8 (.1)		Lus10015494 [exp]	7.3	0.9449
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Lus10028970 [exp]	7.4	0.9453
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10023099 [exp]	8.4	0.9440

Compare expression of checked genes

Lus10018823 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.