Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28350 1549 / 0 Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor (.1.2) AT3G61480 1470 / 0 Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor (.1) AT5G28442 100 / 5e-25 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005119 [exp] 2053 / 0 AT5G28350 1682 / 0.0 Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G087900 [exp] 1773 / 0 AT5G28350 1676 / 0.0 Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor (.1.2) Potri.002G162000 [exp] 1768 / 0 AT5G28350 1706 / 0.0 Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07064 [flax] [poplar] RIC1 RIC1
Representative CDS sequence Show only first row Show all	>Lus10018824 pacid=23144662 polypeptide=Lus10018824 locus=Lus10018824.g ID=Lus10018824.BGIv1.0 annot-version=v1.0 ATGTATATGGCGTACGGATGGCCGCAGGTGATCCCTCTAGACCAAGGATCTTGCCCTTCCTCGCAGCGAATCATCTATCTCAAAGTCATTAACCGCCTCC TTCTCGTCGTTACTCCTTCTCACCTTGAGCTGTGGAGCTCGTCTCAGGTTCCTTACCCCTGTTTCATCTTGTGCATCTGTTTATTTTTGTCGACTTTAGG GTTTTGTTTGGTAACTGTTGACATTGTTGCTGTAATTGGGATCGTGAAGCGTAAAGTGAGATTGGGGAAGTACAAGAGGGATGCCAAGTCGCTGGAGAAG GAAGGCGAGAATTTGCAAGCTGTGTGGAGCCCTGATTCCAAATTGATCGCCATTCTCACTTCTTCTTTCTTTCTTCACATATTCAAGGTCCAATTCACAG ATAAAAGAATACATGTTGGAGGAAAGCAGCCATCAGGATTGTTCCTGGCTAATATAACTCTTCTACTCAGTGAGCTGGTACCCTTTGCCCAAAAAGACTT GACAGTGAGCAATATCGTGACTGATAATAAATATTTGCTGCTTGGACTTTCCAATGGATCTTTATATAGTATGTCTTGGAAGGCCGAGTTTTATGGTAGT TTTGATCTTGATCCCAACACACATGATACTGGTAAAGTTTCTCATTCGTCAAGTCAGTCAGCTAATGCGGTTTCTTTGGCGGAGGAGTCCGGAGTTCCTG TGGTTAATCTTAATACGATAAAGAAGATTGCTATTACAACACTAGAACTTTGCTTACCAATGAGGTTGCTGGTCGTCTTATATTCTGATGGACAGCTGGT TGAGTGCTTTGTGAGTAAGAAAGGGTTGAAGCAAGTTAACTGTATTAAAGCAGAGAAAAGATTGGGCTCAGGTGATGCCATTTGCATTTCAGTAGCTTCA GATCAACAAATTCTTGCTGTTGGTAATAGAAGAGGTGCAGTTGACTTGTATGATCTAGCCAACGCTTCATCACTGATTCGAACTGTTTCTCTGTACGATT GGGGGTATTCTGTGGATCAAACTGGACCTGTCAGTTGTATTGCCTGGACACCTGATAATTCTGCTTTTGCAGTCGGATGGAAATTAAGGGGACTTGCAGT ATGGTCTGTTTCTGGATGTCGTTTGATGTCAACTGTTCGTCAAATTGGATTAGGCAGTGTATCATCTCCAATAGTTAAATCAAATCAGGAATGGAAATAT GAGCCGTTGATGGGTGGCACATCAAAGTTACAATGGGATGAATATGGATATCGGCTTTATGCAACTGAGGAAGGGTCTCTGGAAAGAATTATTGCATTTT CTTTTGGTAAATGCTGCCTTAGTAGGGGAGTGTCTGGCATGACATATGTCCGCCAAGTGATTTACGGCGACGATCGGTTGCTTGTGGTGCAGTCTGAAGA TACTGATGAACTTAAGATCTTGCATCTTAACCTTCCGGGCACTTATATCTCTCAAAATTGGCCAGTCCAGCATGTGGCTGCTAGCAAGGATGGGATGTAC TTGGCTGTTGCTGGTCTACATGGGTTGATTTTATATGATATACGGCTGAAAAAATGGAGGGTGTTTGGAGATATCAGTCAGGAACAAAAGATTCAGTGCA AGGGTTTGTTATGGCTGGGAAAAATTGTGGTTGTCTGCAACTACATAAATTCTTCTGGCACTTATGAACTGCTCTTCTACCCAAGGTATCATCTTGACCA GAGCTCCTTGCTTTGCCGTAAACCGTTGCTTGCGAAGCCTGTGGTGATGGATGTTTATGAAGATTACATACTTGTTACCTACCATCCATTTGACGTCCAC ATATTTCATGTGCGGATAATTGGTGAGCTAACACCGTCTAATACACCAGATCTTGAGCTTTCTACAGTGCGGGAACTCTCAATAATGACGGCAAAGAGCC ATCCTGCAGCAATGCGCTTTATCCCCGACCAGATTCCAAGAGAGAGTTCATTGAACAATCATATTTCATCTTCTTCAGATTTCGTAGCTAGAGAACCTGC GAGATGTCTGATACTGAGAGCAAACGGGGAGCTTTCTCTTTTGGATTTAGATGATGGACGTGAAAGAGAACTTACAAGCTCAGTTGAATTATTTTGGGTT ACTTGTGGTCCATCGGAAGAGAAGACAAATCTAATCGAGGAAGTTTCCTGGTTGGATTATGGTCACCGTGGCATGCAGGTTTGGTATCCATCTCCAGGTG CTGATCCTTTCATGCAGGAGGACGTCATGCAGTTGGATCCAGAGCTGGAGTTTGATCGTGAAGTTTATCCTTTGGGACTTCTTCCAAATGTAGGAGTTGT TGTTGGTGTATCACAGAGAATGTCATTCTCGGCATGCACTGAATTCCCTTGTTTGGAGCCTTCTCCTCAAGCCCAAACGATATTGCACTGCCTTCTTAGA CACCTGCTTCAGAGGAACAAAAGTGAGGAAGCTTTACGGTTAGCTCAATTATCAGCAGAAAAGCCCCATTTCTCTCACTGTCTAGAGTGGCTTTTGTTTA CAGTATTTGACGCAGAGATTTCCAGGAAACATATAAATAAGAACCAGTTATCAGTTCCGGAACATGCAGGCAAGAATTCTCTGTTAGACAAAACCTGTGA TTTGATCAGAAACTTCCCGGAATACCTTGATGTGGTTGTAAATGTTGCAAGAAAAACTGATGGTCGACACTGGGCGGATTTGCTTACTGCTGCTGGAAGA TCAACTGAGTTGTTTGAGGAATGCTTTCAGAGGAGATGGTATAGGACTGCAGCATGCTATATACTGGTAATTGCTAAACTAGAAGGTCCTGCCGTCAGTC AGTATTGTGCTTTACGTTTATTACAGGCTACACTGGACGAGTCCTTATATGAACTTGCTGGGGAGCTGGTTCGATTCTTACTGAGGTCTGGAAAGGATTA TGAGCCTACATCACCAGATTCAGACAAGCTATCGTCCCCCAGATTCTTGGGCTATTTCCTGTTTCGTTCCAGTTATAAAAAGTCATCTTTGGATAAGAGC ACCACATTTAAAGAGCAGAACGCTCATATTGCTTCTGTGAAGAACATTTTAGAAAGCCATGCTAGCTATCTGATGTCTGGGAAGGAACTTACCAAGCTGG TAGCCTTTGTAAAAGGCACTCAGTTTGATTTAGTGGAATATCTGCAAAGAGAGCGGTATGGCTCAGCTCGACTAGAGAATTTCGCATCAGGGCTGGAACT AATTGGGCAGAAGCTTCAAATGGGCACGCTTCAGAGCCGGTTAGATGCAGAGTTTCTATTAGCTCATATGTGTTCTGTCAAGTTCAAGGAGTGGATAGTT GTCCTGGCCACGCTCCTAAGACGCTCCGAGGTACTCTTTGATCTTTTCCACCATGATGCACGGCTATGGAGAGCATATAGCATCACCCTTCAGTCACACC CCACATTTGCCGAGTACAACGATCTTCTTCAAGCCTTGCAAGAACAGCTCTCTTTAGCCTCAAATTCGGACACAGACATGATGACGTTGTGA
AA sequence Show only first row Show all	>Lus10018824 pacid=23144662 polypeptide=Lus10018824 locus=Lus10018824.g ID=Lus10018824.BGIv1.0 annot-version=v1.0 MYMAYGWPQVIPLDQGSCPSSQRIIYLKVINRLLLVVTPSHLELWSSSQVPYPCFILCICLFLSTLGFCLVTVDIVAVIGIVKRKVRLGKYKRDAKSLEK EGENLQAVWSPDSKLIAILTSSFFLHIFKVQFTDKRIHVGGKQPSGLFLANITLLLSELVPFAQKDLTVSNIVTDNKYLLLGLSNGSLYSMSWKAEFYGS FDLDPNTHDTGKVSHSSSQSANAVSLAEESGVPVVNLNTIKKIAITTLELCLPMRLLVVLYSDGQLVECFVSKKGLKQVNCIKAEKRLGSGDAICISVAS DQQILAVGNRRGAVDLYDLANASSLIRTVSLYDWGYSVDQTGPVSCIAWTPDNSAFAVGWKLRGLAVWSVSGCRLMSTVRQIGLGSVSSPIVKSNQEWKY EPLMGGTSKLQWDEYGYRLYATEEGSLERIIAFSFGKCCLSRGVSGMTYVRQVIYGDDRLLVVQSEDTDELKILHLNLPGTYISQNWPVQHVAASKDGMY LAVAGLHGLILYDIRLKKWRVFGDISQEQKIQCKGLLWLGKIVVVCNYINSSGTYELLFYPRYHLDQSSLLCRKPLLAKPVVMDVYEDYILVTYHPFDVH IFHVRIIGELTPSNTPDLELSTVRELSIMTAKSHPAAMRFIPDQIPRESSLNNHISSSSDFVAREPARCLILRANGELSLLDLDDGRERELTSSVELFWV TCGPSEEKTNLIEEVSWLDYGHRGMQVWYPSPGADPFMQEDVMQLDPELEFDREVYPLGLLPNVGVVVGVSQRMSFSACTEFPCLEPSPQAQTILHCLLR HLLQRNKSEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRKHINKNQLSVPEHAGKNSLLDKTCDLIRNFPEYLDVVVNVARKTDGRHWADLLTAAGR STELFEECFQRRWYRTAACYILVIAKLEGPAVSQYCALRLLQATLDESLYELAGELVRFLLRSGKDYEPTSPDSDKLSSPRFLGYFLFRSSYKKSSLDKS TTFKEQNAHIASVKNILESHASYLMSGKELTKLVAFVKGTQFDLVEYLQRERYGSARLENFASGLELIGQKLQMGTLQSRLDAEFLLAHMCSVKFKEWIV VLATLLRRSEVLFDLFHHDARLWRAYSITLQSHPTFAEYNDLLQALQEQLSLASNSDTDMMTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28350			Quinoprotein amine dehydrogena...		Lus10018824 [exp]	0	1
AT2G28520		VHA-A1	vacuolar proton ATPase A1 (.1)		Lus10036133 [exp]	1.0	0.9535
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Lus10002104 [exp]	2.0	0.9520
AT4G31570			unknown protein		Lus10020133 [exp]	4.2	0.9510
AT4G31570			unknown protein		Lus10026934 [exp]	4.5	0.9443
AT2G19950		GC1	golgin candidate 1 (.1.2)		Lus10034941 [exp]	5.0	0.9028
AT4G38200			SEC7-like guanine nucleotide e...		Lus10022983 [exp]	5.3	0.9503
AT2G27900			unknown protein		Lus10009613 [exp]	5.5	0.9256
AT4G11800			Calcineurin-like metallo-phosp...		Lus10042668 [exp]	5.5	0.8972
AT5G47490			RGPR-related (.1)		Lus10028946 [exp]	6.0	0.9409
AT4G32120			Galactosyltransferase family p...		Lus10001954 [exp]	6.5	0.9062

Compare expression of checked genes

Lus10018824 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.