Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G33340 422 / 1e-145 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT1G64830 388 / 2e-132 Eukaryotic aspartyl protease family protein (.1) AT2G35615 372 / 7e-126 Eukaryotic aspartyl protease family protein (.1) AT1G31450 353 / 3e-118 Eukaryotic aspartyl protease family protein (.1) AT2G03200 230 / 1e-70 Eukaryotic aspartyl protease family protein (.1) AT2G28010 228 / 2e-70 Eukaryotic aspartyl protease family protein (.1) AT2G28040 220 / 2e-67 Eukaryotic aspartyl protease family protein (.1) AT3G61820 220 / 2e-66 Eukaryotic aspartyl protease family protein (.1) AT1G01300 218 / 2e-65 Eukaryotic aspartyl protease family protein (.1) AT2G28030 214 / 3e-65 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024903 [exp] 513 / 0 AT5G33340 449 / 3e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024910 [exp] 510 / 1e-179 AT5G33340 452 / 2e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10022912 [exp] 507 / 1e-178 AT5G33340 450 / 1e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10040325 [exp] 499 / 1e-175 AT5G33340 451 / 5e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10023445 [exp] 496 / 2e-174 AT5G33340 448 / 9e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10041151 [exp] 492 / 6e-173 AT5G33340 445 / 1e-154 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10041150 [exp] 449 / 2e-156 AT5G33340 399 / 2e-137 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10002613 [exp] 442 / 3e-153 AT5G33340 406 / 4e-139 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10002611 [exp] 426 / 6e-147 AT5G33340 392 / 9e-134 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G114400 [exp] 429 / 2e-148 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G087900 [exp] 383 / 4e-130 AT5G33340 430 / 8e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G105300 [exp] 359 / 9e-121 AT2G35615 414 / 2e-142 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 239 / 3e-74 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 235 / 9e-73 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 231 / 1e-70 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 224 / 7e-68 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 215 / 2e-64 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 207 / 2e-61 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G128200 [exp] 185 / 4e-53 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10018825 pacid=23144704 polypeptide=Lus10018825 locus=Lus10018825.g ID=Lus10018825.BGIv1.0 annot-version=v1.0 ATGGCTGCGATCATTCACTCACTAGCCGTGATAATGGTCTTTTGCTTCACACCAGATTACTTGGTTACGAACTCCGAGGCCGCCGCCACCTCTGGTGCTG GATTCAGTGTACAATTAATCCACCGTGACTCCCCAATTTCTCCCTTTTACAACCCACTTGCATCTCCATCTGAACGACTCGTAAACGCCCTCCGACGATC CATTGCCCGTCTCCACCGTTTCACTTCACCATCTGCTTCGAGCTTGGCCGTCCAATCCCAAGTAATCGCAAACAACGGCGAATACCTCATGAACATCTCC CTCGGGACACCGCCGGTTACAATCCTGGCCATCGCCGACACTGGAAGTGACGTCTTATGGACACAATGCAAGCCTTGCCCCAGCTGTTACGTGCAGAACG CTCCTTTATTCGACCCTGCATCTTCGCGAACCTACAAGACGTTGCCGTGCTCATCCAGCGCATGTTCTGCCCTACGCGACGAAGGAGCCTTCTGCTCTGA AAATGACACCGTTTGCCATTACCAGGTTGGATATGGCGACCAGTCCCACACGGACGGTGACTTGGCACTTGAAACGTTGACTCTACGGTCGACCGTGAGT GATAGTGTGTCATTTAACAAGACGTTGATCGGATGTGGCCACAACAACGCCGGAACGTTCAATGCTAATGGTTCAGGGATTATCGGGTTAGGAGGTGGAT CTGCTTCTCTCATTACCCAACTTGGCTCATCAATTGCCTATAAATTTTCCTACTGTTTAGTCCAATTGGGAGAGGACAAACTCACAAGTAGCACGATGAA TTTCGGTGACAACGCGATCGTTTCAGGGGGAGTTTCAACCCCGCTTATCTCCGATTCCACAAAGCCTAGTTTCTACTTTCTTAAGTTGGAAGGTGTCAGC GTTGGGGAAAAGAGGATACCATTTCAAGCGGGATCATCGTCTTTTGGATCAGCTGATGGAGAAGGAAACATCATCATCGATTCGGGGACCACCCTTACCA TGCTCCCCACCAAGTTCTTCTCTCAACTGTCTGATGCCTTGGAGAGTCAGATCATCGGCGGGACGAAAACAGAGGACCCACAAGGCTACTTGAGCCTATG CTATGTTGCTACGAGTCATCTCAATGTTCCTGGTATCACTGTTCATTTTGAGGGTGCTGATGTGGAGTTACCTCCGTCAAACGTTTTCGTTCAAATCAAC GATACGGTGACGTGTTTGGGCTTTTATGGTAGCGACGATGCTTCGATTTATGGTAACGTGGCGCAACAAAACTTCCACATTGGCTATGACCTTCAGAAGA GGACTCTATCCTTCAAACCAACGGATTGTGCCCATACTTAG
AA sequence Show only first row Show all	>Lus10018825 pacid=23144704 polypeptide=Lus10018825 locus=Lus10018825.g ID=Lus10018825.BGIv1.0 annot-version=v1.0 MAAIIHSLAVIMVFCFTPDYLVTNSEAAATSGAGFSVQLIHRDSPISPFYNPLASPSERLVNALRRSIARLHRFTSPSASSLAVQSQVIANNGEYLMNIS LGTPPVTILAIADTGSDVLWTQCKPCPSCYVQNAPLFDPASSRTYKTLPCSSSACSALRDEGAFCSENDTVCHYQVGYGDQSHTDGDLALETLTLRSTVS DSVSFNKTLIGCGHNNAGTFNANGSGIIGLGGGSASLITQLGSSIAYKFSYCLVQLGEDKLTSSTMNFGDNAIVSGGVSTPLISDSTKPSFYFLKLEGVS VGEKRIPFQAGSSSFGSADGEGNIIIDSGTTLTMLPTKFFSQLSDALESQIIGGTKTEDPQGYLSLCYVATSHLNVPGITVHFEGADVELPPSNVFVQIN DTVTCLGFYGSDDASIYGNVAQQNFHIGYDLQKRTLSFKPTDCAHT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10018825 [exp]	0	1
AT3G09640		APX1B, APX2	ASCORBATE PEROXIDASE 1B, ascor...		Lus10019906 [exp]	1.4	0.8727
					Lus10005955 [exp]	6.7	0.8336
					Lus10004431 [exp]	7.1	0.8232
AT3G05250			RING/U-box superfamily protein...		Lus10010911 [exp]	8.0	0.8442
AT3G02125			unknown protein		Lus10013196 [exp]	8.5	0.8295
AT3G07610		IBM1	increase in bonsai methylation...		Lus10004549 [exp]	8.8	0.8001
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Lus10034674 [exp]	11.7	0.6630
AT3G24850	B3		Domain of unknown function (DU...		Lus10038802 [exp]	13.3	0.7460
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10026177 [exp]	18.7	0.7948
AT5G10530			Concanavalin A-like lectin pro...		Lus10042309 [exp]	27.9	0.7821

Compare expression of checked genes

Lus10018825 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.