Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23470 292 / 2e-99 PLAC8 family protein (.1.2.3) AT1G63830 291 / 3e-99 PLAC8 family protein (.1.2.3) AT5G41390 290 / 5e-98 PLAC8 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014759 [exp] 362 / 6e-122 AT3G09740 308 / 4e-102 syntaxin of plants 71 (.1) Lus10017509 [exp] 301 / 1e-102 AT1G63830 379 / 1e-134 PLAC8 family protein (.1.2.3) Lus10028774 [exp] 268 / 3e-89 AT1G63830 350 / 1e-122 PLAC8 family protein (.1.2.3) Lus10036377 [exp] 185 / 7e-54 AT3G09740 347 / 8e-117 syntaxin of plants 71 (.1) Lus10000149 [exp] 117 / 1e-32 AT5G41390 103 / 3e-28 PLAC8 family protein (.1.2) Lus10005117 [exp] 74 / 1e-16 AT4G23470 58 / 4e-12 PLAC8 family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G087600 [exp] 309 / 5e-106 AT5G41390 327 / 8e-114 PLAC8 family protein (.1.2) Potri.003G130700 [exp] 303 / 1e-103 AT1G63830 341 / 1e-119 PLAC8 family protein (.1.2.3) Potri.001G101100 [exp] 299 / 4e-102 AT1G63830 353 / 2e-124 PLAC8 family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04749 [flax] [poplar] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Lus10018826 pacid=23144643 polypeptide=Lus10018826 locus=Lus10018826.g ID=Lus10018826.BGIv1.0 annot-version=v1.0 ATGAATTATTCCGCCGAGAAGGCGGCGCAAATGCATTTGCGCCAGAACTACAGGAATCTCTGGCACACCGATCTCACCGGTGCCATCGCCGCTGATGCTC CCTTTTGCTGTTTCGCCCTGGTTTGTGGACCATGCGCTTCCTACATTCTGCGCAAGCGAGCTCTTTATAATGACTTGTCAAGGTACACTTGCTGTGCTGG GTACATGCCTTGCAGTGGCAAATGCGGAGAAAGCAATTGCCCTCAAGTTTGTCTTTGCACCGAGGTGTGGTGTTGCTTTGCGAATTCGGTTGCCTCGACC CGCTTCTTGTTGCAAGATGAATTCAACATCCAGACTTCACCCTGTGATAACTGCATGATAGGGTTCATGCTGTGCCTGCAGCAGTTAGCCTGTATCTGCT CCTGTGTTGCATGCATAACTGGAATCGACGAAGTAGGAGAGATTGCTCACCTCTTGACTTGCTTGTCTGATATCGTCTATTGCTCGATTTGTCCATGTCT TCAGACACAACACAAAGTTGAAATGGATAAAAGAGACGGCAAGTACGGGCCTCCACCAGCGATGGCAGTGCCTCCGGTGCAGCAGATGTCGCGGATTGAC CAGCCAATTCCACCGTCTCCAAACTATCCGCCTCATGACGACAACTTCAAGGCCGCTGATCATCAACCCTCACTATATTATCCGGGAGCAGAATATCCGC CAGGGTCGTACCCTCCTCCACCACCAGGGTTTGGCCCTCCACCAAGCGGATATCCTCATCCCAGATCTTACCCTCTTCCCCCTCCAGGATATAGTCCTCA TCATGCACATCCACCACCAGGAGGGGCAGGTTACAATCAATCACCTGGCTACCCTCCTTCATATCCACCGCCACCTCCACCGCCGCCACCACCACCACCT GCTTATCCTCCCCCAGACAGCAAAGACCACAAGTGA
AA sequence Show only first row Show all	>Lus10018826 pacid=23144643 polypeptide=Lus10018826 locus=Lus10018826.g ID=Lus10018826.BGIv1.0 annot-version=v1.0 MNYSAEKAAQMHLRQNYRNLWHTDLTGAIAADAPFCCFALVCGPCASYILRKRALYNDLSRYTCCAGYMPCSGKCGESNCPQVCLCTEVWCCFANSVAST RFLLQDEFNIQTSPCDNCMIGFMLCLQQLACICSCVACITGIDEVGEIAHLLTCLSDIVYCSICPCLQTQHKVEMDKRDGKYGPPPAMAVPPVQQMSRID QPIPPSPNYPPHDDNFKAADHQPSLYYPGAEYPPGSYPPPPPGFGPPPSGYPHPRSYPLPPPGYSPHHAHPPPGGAGYNQSPGYPPSYPPPPPPPPPPPP AYPPPDSKDHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23470			PLAC8 family protein (.1.2.3)		Lus10018826 [exp]	0	1
AT5G45420	MYB	maMYB	membrane anchored MYB, Duplica...		Lus10036429 [exp]	1.4	0.8137
AT5G17350			unknown protein		Lus10017620 [exp]	7.7	0.7819
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10013952 [exp]	7.7	0.7984
AT5G63450		CYP94B1	"cytochrome P450, family 94, s...		Lus10014741 [exp]	17.9	0.7687
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10032188 [exp]	19.9	0.7912
AT2G27710			60S acidic ribosomal protein f...		Lus10019846 [exp]	23.0	0.7629
AT5G43490			unknown protein		Lus10003153 [exp]	30.7	0.7533
					Lus10002306 [exp]	43.1	0.7337
AT5G03450			Transducin/WD40 repeat-like su...		Lus10042191 [exp]	73.9	0.7699
AT4G22240			Plastid-lipid associated prote...		Lus10001099 [exp]	86.6	0.7464

Compare expression of checked genes

Lus10018826 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.