Plant FIBer expression Database

Lus10018827 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G46060 740 / 0 transmembrane protein-related (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002472
[exp]
660 / 0 AT2G46060 412 / 1e-132 transmembrane protein-related (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G087300
[exp]
916 / 0 AT2G46060 904 / 0.0 transmembrane protein-related (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0192 GPCR_A PF12036 DUF3522 Protein of unknown function (DUF3522)
Representative CDS sequence
>Lus10018827 pacid=23144708 polypeptide=Lus10018827 locus=Lus10018827.g ID=Lus10018827.BGIv1.0 annot-version=v1.0
ATGGCTGGGAATTCGATTCTCAGGTGTCGGACGATTGTACTAACCACCTGTCTCCTTCTCCTGCTACTTTCTTCTACAATAAACGGTCAGCAGCTGCCTT
TCTCCGATACTTCTACTGTTTCCAGCTTGAGATACCCTCAGACTCGGGTCAAACCTTATGACTTGCGTTATATCAGGGTTGAATTGCCACCATGGTTCTC
TTCTGTTTCCATCGCAGTAGACTCAGATGTGCAAGCTGGTGCAGGGAGCAAGGCATCTAGTCCGATTATTTGTCTGAGAGACGGCAGCCCCCCTCTCCCT
GATGTCTTAAACAGTTCCGTCATACAATCAGGTCCTCTATCTAGTGCAGCATTTGAAAGTATTCAAGGCTCTCAGAATGTGGACTGCTTCCCAATGCAGA
AAAACCTGACTGTGAGGGTGACAAATGAGCAGGTGTCTCCTGGAGTCTGGTATCTAGGCGCATTCAATGGGATTGGGGCAACTAGGGCACAATCCAAAAT
GATTGTACGCAGACCAGATTATTCCTTTAGTGCCAACATCAGCGTTGATGGGTGCATGACTACGACAATGTCGGGTCAATACTGTAATCAGACGATCAAC
CCACTTTCTTGTTCTTTGTCTAACAACTATAGCCTTTGGAATGCGGGCTTCAGTAAAACTCAAAGTGCAATTTCCTGTGACGACTTTGGGATTTCTTGCC
ATGGAGTGGATGAACAAAAAGTGTTTTCAGTTGATGTGATGGATTTAGCCGAAGAATTGTCTATAATGGCTCAAAATATCAGTGCTAACTCAAATGACGA
TGCCAGTCATATATCTTTAATATGTTATGCTCGGAATGGTGCAATGCCTTCGGTGGCGCTGCACGATTATTCCGTTGACTTGGAAAAAGCTCCTTTAGTA
ATTAACTCACCAAAGCTTGGGCGGTGGTTTTTCTCCATCATACCTACTAATCTTGGAAAAGTTCAAGACAATAAGACACATATATGCTACTCCATTAGAG
GGCAAGTGTTTGCATGTCCGTCAGGAAAGGCTGGACCCAACTGTACATTTGAGAGACACACCCTTGAGACAGTTCTCAGGAGGGATTCCAATCCCTTCGA
ATCCTATTATTTGCCAGTGGGTGGGGCAGTGTCGTCAGAGACTGCAAATTTTCCCCTTGAGTCCTTAAATAAATCTTCCGACAGCATAGAATCCGATCTT
TGGACTTATTTTGTCTTGAACTTACCGCGTGGTGCTGCAGGAAGCAATATACATATACATATAACATCAGTTACAAAAATAAATTACGAGATATATGCTA
AAGTTGGCGGATCACCATCTCTCGAGAGATGGGACTACTACTATGCTAACAGCACGAGTAACAGCAACAGTTCCATGTTTTTTATGTTGTATGATTCAAC
TGAACAGAAGGTTGATTTTTACATCCTATATGTTAAAGAAGGAATTTGGACTTTTGGGTTAAGGCGTTTAAACATCAGTAGCACTTCAAGTGATCAGACC
CTCATGTCTGTTTCAGTCGAGAGATGCCCGAGAAAATGCTCTTCCCATGGGGACTGCAAAGTGGCTCTCGATGCCAGTGGCTTGACATCATACAGCTTTT
GTGCTTGTGATCGAACACATGGAGGGTTTGACTGTGGCACTGAGATTGTATCACATCGAGGGCACGTACGCCAGTCGATTGCCCTAATTGCATCCAATGC
TGCGGCTGTATTTCCTGCAATTTGGGCTCTTCGACAGAAGGCTTTTGCAGAATGGGTGCTGTTCACGTCTAGTGGAATTTCCAGTGGACTATATCATGCA
TGTGATGTAGGCACCTGGTGCGCACTATCATATAACGTCCTACAGTTCATGGACTTTTGGCTCTCATTCATGGCTGTGGTTAGCACTTTTGTATACTTAG
CTACTATTGATGAGGTATTTAAGAGGACCATTCACACGGTTGTTGCCATCGTCACTGCCCTAATGGCCATAACTAAAGCAACAAGATGGCAAACCATGAG
GAGATGGATGGACAACTTGATCAAGTCAGTGTGGAGGCAGTTTCAGTGGGGATTTTTAATTGCAGGGTTTGTTTTCTTGGCCCTTGCAGCAGTAAGCTGG
ACACTGGAAAGCAGTGAAACCTATTGGATGTGGCACAGTTTTGCCTGGTCTATTTTCGACTAA
AA sequence
>Lus10018827 pacid=23144708 polypeptide=Lus10018827 locus=Lus10018827.g ID=Lus10018827.BGIv1.0 annot-version=v1.0
MAGNSILRCRTIVLTTCLLLLLLSSTINGQQLPFSDTSTVSSLRYPQTRVKPYDLRYIRVELPPWFSSVSIAVDSDVQAGAGSKASSPIICLRDGSPPLP
DVLNSSVIQSGPLSSAAFESIQGSQNVDCFPMQKNLTVRVTNEQVSPGVWYLGAFNGIGATRAQSKMIVRRPDYSFSANISVDGCMTTTMSGQYCNQTIN
PLSCSLSNNYSLWNAGFSKTQSAISCDDFGISCHGVDEQKVFSVDVMDLAEELSIMAQNISANSNDDASHISLICYARNGAMPSVALHDYSVDLEKAPLV
INSPKLGRWFFSIIPTNLGKVQDNKTHICYSIRGQVFACPSGKAGPNCTFERHTLETVLRRDSNPFESYYLPVGGAVSSETANFPLESLNKSSDSIESDL
WTYFVLNLPRGAAGSNIHIHITSVTKINYEIYAKVGGSPSLERWDYYYANSTSNSNSSMFFMLYDSTEQKVDFYILYVKEGIWTFGLRRLNISSTSSDQT
LMSVSVERCPRKCSSHGDCKVALDASGLTSYSFCACDRTHGGFDCGTEIVSHRGHVRQSIALIASNAAAVFPAIWALRQKAFAEWVLFTSSGISSGLYHA
CDVGTWCALSYNVLQFMDFWLSFMAVVSTFVYLATIDEVFKRTIHTVVAIVTALMAITKATRWQTMRRWMDNLIKSVWRQFQWGFLIAGFVFLALAAVSW
TLESSETYWMWHSFAWSIFD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G46060 transmembrane protein-related ... Lus10018827
[exp]
0 1
AT5G24740 Protein of unknown function (D... Lus10003834
[exp]
2.4 0.8035
AT3G22260 Cysteine proteinases superfami... Lus10027312
[exp]
8.8 0.7943
AT5G35200 ENTH/ANTH/VHS superfamily prot... Lus10005184
[exp]
11.4 0.7838
AT1G06870 Plsp2A plastidic type I signal peptid... Lus10011670
[exp]
11.7 0.7517
AT1G71010 FAB1C FORMS APLOID AND BINUCLEATE CE... Lus10016702
[exp]
12.2 0.8009
AT5G26240 ATCLC-D, CLC-D chloride channel D (.1) Lus10010531
[exp]
12.7 0.8201
AT4G24160 alpha/beta-Hydrolases superfam... Lus10033927
[exp]
15.0 0.7895
AT2G39340 AtSAC3A yeast Sac3 homolog A, SAC3/GAN... Lus10030305
[exp]
15.7 0.7954
AT1G70060 SNL4 SIN3-like 4 (.1) Lus10013293
[exp]
18.2 0.7865
AT3G01650 RGLG1 RING domain ligase1 (.1) Lus10032097
[exp]
18.5 0.8056

Lus10018827 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.