Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00330 440 / 3e-153 CRCK2 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) AT5G58940 361 / 2e-121 CRCK1 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) AT2G11520 312 / 1e-101 CRCK3 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) AT1G79620 229 / 2e-66 Leucine-rich repeat protein kinase family protein (.1) AT1G30570 221 / 4e-64 HERK2 hercules receptor kinase 2 (.1) AT1G06840 216 / 4e-62 Leucine-rich repeat protein kinase family protein (.1) AT3G46290 214 / 7e-62 HERK1 hercules receptor kinase 1 (.1) AT5G59700 214 / 8e-62 Protein kinase superfamily protein (.1) AT2G23450 211 / 3e-61 Protein kinase superfamily protein (.1.2) AT1G10620 211 / 4e-61 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017787 [exp] 706 / 0 AT4G00330 471 / 1e-163 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10036376 [exp] 556 / 0 AT4G00330 474 / 1e-166 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10014760 [exp] 541 / 0 AT4G00350 703 / 0.0 MATE efflux family protein (.1) Lus10040704 [exp] 382 / 7e-130 AT5G58940 418 / 3e-143 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) Lus10018203 [exp] 382 / 1e-123 AT3G46980 689 / 0.0 phosphate transporter 4;3 (.1.2.3) Lus10041796 [exp] 342 / 3e-115 AT2G11520 498 / 2e-175 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10028613 [exp] 337 / 8e-111 AT2G11520 540 / 0.0 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10018913 [exp] 319 / 1e-103 AT2G11520 520 / 0.0 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10028347 [exp] 288 / 8e-93 AT2G11520 435 / 3e-149 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G087200 [exp] 502 / 3e-177 AT4G00330 488 / 7e-172 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Potri.002G161600 [exp] 494 / 6e-174 AT4G00330 479 / 2e-168 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Potri.009G041900 [exp] 380 / 5e-129 AT5G58940 412 / 3e-141 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) Potri.006G064200 [exp] 342 / 2e-113 AT2G11520 508 / 2e-177 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Potri.018G124600 [exp] 340 / 2e-112 AT2G11520 502 / 6e-175 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Potri.016G144100 [exp] 244 / 4e-72 AT1G79620 1380 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G114400 [exp] 241 / 6e-71 AT1G79620 1295 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232500 [exp] 228 / 4e-66 AT5G49760 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G032100 [exp] 214 / 1e-65 AT1G52540 451 / 3e-159 Protein kinase superfamily protein (.1) Potri.004G231700 [exp] 225 / 3e-65 AT5G49760 1031 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10018828 pacid=23144747 polypeptide=Lus10018828 locus=Lus10018828.g ID=Lus10018828.BGIv1.0 annot-version=v1.0 ATGAAAAGTCCTCTTACGCACCGGAACCCTAACTCCGGCTCCCGCTCCCGCTCCCGCTCAACCTCAGCCACCCTTCCTCCTTACGCCTCCTACTCCCAAC CTTCCTCCGTCGAGAACCGGAGGCCCCCCTTCAGATCACTACTCTCCTTCTTCTCCTCTTGCTTCTCCTCCCCTCCAGACCCCGACGCTTCCAGAAACTT CCCTGACTCTGATGAGTCCAAGTCTCGTTCCCTTACGTCGGATGCTTGGGATTCCAGTAGAGGAAGGAGACGAAGCACCGGTGGGAGCAGTATCTACGGA AGTCCACAAAGCTCCACCCCCAAACGAGAGCCAGGGAGTATGAAATTCACCATTGATGAAATCTACAGAGCCACCAAGGCATTCTCCCCTTCTTTTAAGA TCGGGCAAGGCGGGTATGGCACTGTCTACAAAGGCAAGCTCGACGATGGGACCGTTGTCGCCGTCAAGCGTGCTAAGAAGAGCGTGCACGATAAGCATTT AGGTGCGGAGTTTCGAAGCGAAGTCCAGACCCTAGCACAAATTGAGCATTTGAATTTAGTCAAGTTCTTTGGGTTGTTGGAGCATGAAGATGAAAAAATT ATTGTTTTGGAATATGTTCCTAATGGAACACTTAGAGAACATCTAGATTGCAAGCACGGAACTGTTCTTGACCTTTCTGCACGCCTGGATATCGCCATTG ATGTTGCTCATGCTGTCACCTATCTACATATGTACACTGACCGTCCGATAATTCACAGGGACATCAAGTCTTCCAACATCCTCTTAACAGAGAACTTCCG TGCTAAGGTTGCTGATTTTGGATTTGCTAGACTGGTGGCTGATTCTGAATCGGAAGCTACTCATATCTCCACCCAAGTAAAAGGGACTGCAGGTTATTTG GATCCAGAGTACCTCAGAACCTATCAGCTTACTGAGAAGAGCGATGTGTATTCCTTCGGTGTGTTACTGGTGGAGCTTGTAAGTGCCAGGCGGCCCATCG AACCAAAACGCGAGCTTAGGGAGCGTATCGCCACAAGATGGGCAATGAGGAAGTTTAGTGATGGAAGTGCAAGTTCCATATTGGACCCAAATTTAGAACA CAATGATGCAAACCACTTGGTACTTGAAAAGATTCTGGAGCTGTCATTGTTGCAGTGTCTGGCTCCTCACAGACAGAAGCGGCCAAGCATGAGGAAGTGC GCAGAGGTCCTTTGGGGTATCCGCAGAGATTACAAAGAACTTGCAGCTCTAGAGATACCTTCACTGTCCTCAAATTCTCAGCGGGGTTCTGCCCGATCTG CACTGCCATGA
AA sequence Show only first row Show all	>Lus10018828 pacid=23144747 polypeptide=Lus10018828 locus=Lus10018828.g ID=Lus10018828.BGIv1.0 annot-version=v1.0 MKSPLTHRNPNSGSRSRSRSTSATLPPYASYSQPSSVENRRPPFRSLLSFFSSCFSSPPDPDASRNFPDSDESKSRSLTSDAWDSSRGRRRSTGGSSIYG SPQSSTPKREPGSMKFTIDEIYRATKAFSPSFKIGQGGYGTVYKGKLDDGTVVAVKRAKKSVHDKHLGAEFRSEVQTLAQIEHLNLVKFFGLLEHEDEKI IVLEYVPNGTLREHLDCKHGTVLDLSARLDIAIDVAHAVTYLHMYTDRPIIHRDIKSSNILLTENFRAKVADFGFARLVADSESEATHISTQVKGTAGYL DPEYLRTYQLTEKSDVYSFGVLLVELVSARRPIEPKRELRERIATRWAMRKFSDGSASSILDPNLEHNDANHLVLEKILELSLLQCLAPHRQKRPSMRKC AEVLWGIRRDYKELAALEIPSLSSNSQRGSARSALP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10018828 [exp]	0	1
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Lus10020763 [exp]	2.2	0.8086
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10026378 [exp]	2.4	0.8083
AT5G44510		TAO1	target of AVRB operation1 (.1)		Lus10001537 [exp]	3.7	0.8388
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Lus10031723 [exp]	6.7	0.8217
AT5G01750			Protein of unknown function (D...		Lus10009092 [exp]	6.8	0.8220
AT1G27170			transmembrane receptors;ATP bi...		Lus10020524 [exp]	7.2	0.8186
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10009684 [exp]	8.1	0.7909
AT1G27170			transmembrane receptors;ATP bi...		Lus10020536 [exp]	9.8	0.7841
AT1G27170			transmembrane receptors;ATP bi...		Lus10020537 [exp]	11.7	0.7600
AT2G45910			U-box domain-containing protei...		Lus10036363 [exp]	13.3	0.8006

Compare expression of checked genes

Lus10018828 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.