Plant FIBer expression Database

Lus10018829 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G46000 150 / 1e-45 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017790
[exp]
149 / 7e-46 AT2G46000 81 / 1e-19 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G086200
[exp]
182 / 5e-58 AT2G46000 176 / 1e-55 unknown protein
PFAM info
Representative CDS sequence
>Lus10018829 pacid=23144636 polypeptide=Lus10018829 locus=Lus10018829.g ID=Lus10018829.BGIv1.0 annot-version=v1.0
ATGGCTACCAAATCTATTCCCTCTACCCTCTTCCTGTCACTCCTCCTTCTCCTCCTCTACATTCTGCCTACCGCCGTTCAAGGAGGTGTCCGAAAATTCC
ACATCAGCGATGACCTCCGGGATGTAGTGGACGACGAGGAGGACGAAGCCTGGAAGGAATGGGGGAAGAAGAAGACCTCCGACGAGTTCGATCCCCCTCC
TTCCGATATGTCAAATATGGGGATTGAAGAGATCCAGGAAGCCTTCATGAAGCGCAACATGGCCCCTGTTTTCGGTTTCATCAAGCTCCGAGTTGGCGTC
AAACGCACTCCCGATATGGTGGCGGCTATCGCTAAGAAGTGGACCAAAATGCTGAGAGCCGGAGCCACTGAAGTGAATCTCATGGGGATTGATCGTGGCA
CCATCATGTTTAACATGGTTGATGGCCGCCGATCGCTTGAGTTGAAGGAATTCGTGTTGAACCAGCCGGAGGCATATGAGATCAAGATTGGGGATAATTT
GTTCCGTCGAAAAGGAGATCCGCCATTGGAGAACGTGATTGAAGAACTCCAAAGGGCTAAGCACGAAAATTCACAGGCAGAGGGGGAGAATCCGGAGGAG
ACAACAAAAGAGGAGGAGGTGGATGAAGAGGATGTTAAAGAAGAACTCTAG
AA sequence
>Lus10018829 pacid=23144636 polypeptide=Lus10018829 locus=Lus10018829.g ID=Lus10018829.BGIv1.0 annot-version=v1.0
MATKSIPSTLFLSLLLLLLYILPTAVQGGVRKFHISDDLRDVVDDEEDEAWKEWGKKKTSDEFDPPPSDMSNMGIEEIQEAFMKRNMAPVFGFIKLRVGV
KRTPDMVAAIAKKWTKMLRAGATEVNLMGIDRGTIMFNMVDGRRSLELKEFVLNQPEAYEIKIGDNLFRRKGDPPLENVIEELQRAKHENSQAEGENPEE
TTKEEEVDEEDVKEEL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G46000 unknown protein Lus10018829
[exp]
0 1
AT1G11680 EMB1738, CYP51A... embryo defective 1738, CYTOCHR... Lus10001713
[exp]
3.5 0.9107
AT2G04780 FLA7 FASCICLIN-like arabinoogalacta... Lus10001733
[exp]
4.5 0.9100
AT5G14790 ARM repeat superfamily protein... Lus10032152
[exp]
6.3 0.8623
AT1G72480 Lung seven transmembrane recep... Lus10013162
[exp]
9.8 0.9080
AT1G33250 Protein of unknown function (D... Lus10008293
[exp]
11.6 0.8901
AT5G14800 EMB2772, AT-P5C... EMBRYO DEFECTIVE 2772, pyrroli... Lus10034453
[exp]
12.5 0.8243
AT5G16760 AtITPK1 inositol \(1,3,4\) P3 5/6-kina... Lus10038765
[exp]
13.0 0.8877
AT4G32330 TPX2 (targeting protein for Xk... Lus10002012
[exp]
13.3 0.9063
AT5G27490 Integral membrane Yip1 family ... Lus10029935
[exp]
15.2 0.8891
AT1G34430 EMB3003 embryo defective 3003, 2-oxoac... Lus10006069
[exp]
15.7 0.8852

Lus10018829 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.