Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45970 437 / 1e-152 CYP86A8, LCR LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) AT4G00360 426 / 6e-148 ATT1, CYP86A2 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1) AT1G01600 415 / 7e-144 CYP86A4 "cytochrome P450, family 86, subfamily A, polypeptide 4", cytochrome P450, family 86, subfamily A, polypeptide 4 (.1) AT1G63710 395 / 2e-136 CYP86A7 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) AT5G58860 319 / 9e-107 CYP86A1 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) AT5G08250 198 / 4e-60 Cytochrome P450 superfamily protein (.1) AT5G23190 197 / 2e-59 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT1G69500 191 / 3e-57 CYP704B1 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) AT1G24540 164 / 7e-47 CYP86C1 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) AT1G13150 160 / 2e-45 CYP86C4 "cytochrome P450, family 86, subfamily C, polypeptide 4", cytochrome P450, family 86, subfamily C, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017789 [exp] 518 / 0 AT2G45970 465 / 1e-163 LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) Lus10032278 [exp] 394 / 2e-135 AT1G63710 792 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Lus10018217 [exp] 320 / 8e-107 AT5G58860 802 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10040687 [exp] 317 / 8e-106 AT5G58860 803 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10010193 [exp] 196 / 8e-59 AT5G23190 741 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10017394 [exp] 195 / 3e-58 AT5G23190 739 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10040986 [exp] 189 / 4e-56 AT5G23190 751 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10036772 [exp] 187 / 1e-55 AT1G69500 863 / 0.0 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) Lus10037157 [exp] 186 / 3e-55 AT1G69500 868 / 0.0 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G085800 [exp] 456 / 7e-160 AT2G45970 866 / 0.0 LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) Potri.003G129100 [exp] 397 / 6e-137 AT1G63710 823 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Potri.009G043700 [exp] 314 / 7e-105 AT5G58860 827 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Potri.001G249700 [exp] 308 / 1e-102 AT5G58860 790 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Potri.007G072100 [exp] 203 / 2e-61 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.005G092200 [exp] 197 / 3e-59 AT5G23190 788 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.008G088900 [exp] 190 / 1e-56 AT1G69500 868 / 0.0 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) Potri.002G042200 [exp] 168 / 1e-48 AT5G63450 442 / 3e-151 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Potri.016G031800 [exp] 164 / 1e-48 AT3G56630 402 / 1e-138 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.006G033600 [exp] 166 / 1e-47 AT3G56630 576 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10018830 pacid=23144629 polypeptide=Lus10018830 locus=Lus10018830.g ID=Lus10018830.BGIv1.0 annot-version=v1.0 ATGGACATCTCGACTGCATTGCTCCTGCTCTCCGCCGTCACCGCTTACCTCCTCTGGTTCACCTTCATCTCCCGCTCCTGGCGTGGCCCGCGTGTCTGGC CACTCCTCGGCTCCCTTCCTGGACTCATTGAGAACTGCGACCGCCTCCATGACTGGATCTCCGACAACCTCCGAGCCTGTGGCGGCACTTACCAAACCTG CATCTGCGCCGTCCCCTTTCTAGCCAAAAAGCAAGGCCTCGTCACCGTCACCTGCGACCCCAAAAACATCGAGCACATTCTCAAGACTCGTTTCGACAAC TACCCCAAGGGCCCCACTTGGCAAGCCGTCTTCCACGAGCTCCTCGGCGAAGGCATCTTCAACTCCGACGGAGACACCTGGCGCTTCCAGCGTAAGACCG CCGCACTCGAGTTCACCACTAGGACTTTACGCCAAGCCATGGCTCGCTCGGGCAGCCGCGCCATTCAGCTCAGATTCTGCCCCATTCTCCAATCGGCTCA GCTTGACTCCCAGCCGGTTGACCTTCAGGACTTGTTGCTTCGGCTCACTTTCGACAACATCTGCGGCTTGGCTTTCGGGAAAGATCCGGAGACTTGCTCC CCGGGCCTCCCCGAAAACAGCTTCGCATCGGCTTTCGATCGAGCCACTGAAGCTTCTCTCCAGCGCTTCATTCTCCCTGAAGTGATTTGGAAGGTGAAAA AATGGCTTCGGCTCGGAATGGAAGTCAGCTTGAGCCGAAGCATTACTCAGCTTGACGGATACTTAACGGCCGTTTTAAACCCGCGAACAGAGGGGGTGCT GGGGCACGGGAATAATTACAAGTCACGGAAATAA
AA sequence Show only first row Show all	>Lus10018830 pacid=23144629 polypeptide=Lus10018830 locus=Lus10018830.g ID=Lus10018830.BGIv1.0 annot-version=v1.0 MDISTALLLLSAVTAYLLWFTFISRSWRGPRVWPLLGSLPGLIENCDRLHDWISDNLRACGGTYQTCICAVPFLAKKQGLVTVTCDPKNIEHILKTRFDN YPKGPTWQAVFHELLGEGIFNSDGDTWRFQRKTAALEFTTRTLRQAMARSGSRAIQLRFCPILQSAQLDSQPVDLQDLLLRLTFDNICGLAFGKDPETCS PGLPENSFASAFDRATEASLQRFILPEVIWKVKKWLRLGMEVSLSRSITQLDGYLTAVLNPRTEGVLGHGNNYKSRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45970		CYP86A8, LCR	LACERATA, "cytochrome P450, fa...		Lus10018830 [exp]	0	1
AT2G28610	HD	PRS1, PRS, WOX3	WUSCHEL RELATED HOMEOBOX 3, PR...		Lus10023332 [exp]	1.0	0.9580
AT4G00360		ATT1, CYP86A2	"cytochrome P450, family 86, s...		Lus10018831 [exp]	2.0	0.9394
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Lus10008208 [exp]	2.8	0.9439
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Lus10013956 [exp]	7.7	0.9114
AT3G57440			unknown protein		Lus10031072 [exp]	8.4	0.9133
AT2G45970		CYP86A8, LCR	LACERATA, "cytochrome P450, fa...		Lus10017789 [exp]	11.5	0.9026
AT1G32780			GroES-like zinc-binding dehydr...		Lus10033241 [exp]	19.3	0.9008
AT4G22756		ATSMO1-2, ATSMO...	sterol C4-methyl oxidase 1-2 (...		Lus10004324 [exp]	23.4	0.9398
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Lus10019086 [exp]	30.7	0.9303
AT1G17260		AHA10	autoinhibited H\(+\)-ATPase is...		Lus10037466 [exp]	31.0	0.9273

Compare expression of checked genes

Lus10018830 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.