Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00360 403 / 8e-139 ATT1, CYP86A2 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1) AT1G01600 389 / 1e-133 CYP86A4 "cytochrome P450, family 86, subfamily A, polypeptide 4", cytochrome P450, family 86, subfamily A, polypeptide 4 (.1) AT2G45970 380 / 3e-130 CYP86A8, LCR LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) AT1G63710 349 / 5e-118 CYP86A7 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) AT5G58860 328 / 3e-110 CYP86A1 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) AT5G23190 272 / 1e-87 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT5G08250 261 / 2e-84 Cytochrome P450 superfamily protein (.1) AT1G13140 232 / 1e-72 CYP86C3 "cytochrome P450, family 86, subfamily C, polypeptide 3", cytochrome P450, family 86, subfamily C, polypeptide 3 (.1.2) AT1G13150 232 / 2e-72 CYP86C4 "cytochrome P450, family 86, subfamily C, polypeptide 4", cytochrome P450, family 86, subfamily C, polypeptide 4 (.1) AT3G26125 230 / 1e-71 CYP86C2 "cytochrome P450, family 86, subfamily C, polypeptide 2", cytochrome P450, family 86, subfamily C, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014768 [exp] 432 / 1e-143 AT4G00360 756 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1) Lus10024644 [exp] 364 / 2e-125 AT1G63710 562 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Lus10032278 [exp] 363 / 7e-123 AT1G63710 792 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Lus10040687 [exp] 326 / 3e-109 AT5G58860 803 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10018217 [exp] 325 / 9e-109 AT5G58860 802 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10010193 [exp] 251 / 1e-79 AT5G23190 741 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10017394 [exp] 249 / 2e-78 AT5G23190 739 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10040986 [exp] 240 / 3e-75 AT5G23190 751 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10006232 [exp] 225 / 9e-70 AT1G24540 524 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G085800 [exp] 425 / 3e-147 AT2G45970 866 / 0.0 LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) Potri.003G129100 [exp] 384 / 2e-131 AT1G63710 823 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Potri.001G249700 [exp] 335 / 5e-113 AT5G58860 790 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Potri.009G043700 [exp] 334 / 2e-112 AT5G58860 827 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Potri.007G072100 [exp] 256 / 9e-82 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.005G092200 [exp] 254 / 1e-80 AT5G23190 788 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.008G183300 [exp] 248 / 8e-79 AT1G24540 682 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Potri.010G050100 [exp] 239 / 3e-75 AT1G24540 684 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Potri.016G031700 [exp] 213 / 1e-65 AT3G56630 629 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.007G080300 [exp] 207 / 5e-63 AT4G39490 574 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10018831 pacid=23144729 polypeptide=Lus10018831 locus=Lus10018831.g ID=Lus10018831.BGIv1.0 annot-version=v1.0 ATGAAGAAAAAGAAAGAGTCCTACTCGGACACGTTCCTTCAACACGTGGCGTTGAACTTCATCTTAGCTGGACGCGACACGTCATCCGTCGCCCTGAGCT GGTTCTTCTGGTTGATCATCCAGAATCCCTCCGTCGAAGAAAAAGTTCTCAAGGAGCTTTGCACCGTCCTCGAGGATACACGTGGAGCTGACGTGGAAAA GTGGTTGGACGACCCGCTTGATTTCGAAGAGGTTGACCGTCTCGTCTACCTGAAAGCGGCATTGTCGGAGACCTTACGCCTCTACCCATCGGTCCCGCAG GACTCCAAGCATGTAGTTTCCGACGATGTGCTTCCCGACGGGACGTTTCTGCCAGCGGGATCTTCGGTTACGTACTCGATATACGCCGCCGGGAGGATGA GGTCGACATGGGGGGACGACTGCATGGAGTTCCGGCCGGAGCGGTGGATGTCTCCTGACGGGGAGAAATTCGTTGCGCACGATTCGTACAAGTTCGTGGC GTTCAATGCCGGGCCGAGGATTTGCTTGGGGAAGGACTTAGCGTACCTGCAAATGAAGTCGGTTGTGGCGGCGGTGCTTCTCCGGCACAGGCTGACGGTG GCGGAAGGGCATAAAGTCGAGCAGAAGATGTCGTTGACCCTGTTCATGAAAAATGGGTTGATGGTCAACGTGGGGAAGCGGGACCTAGAAGAGACGGCGG CGAGAATAAGGAGGGTGGCCGGGGACGCGAATGGTAATAAAGGATCGAATGGAGGACAGAATGGTAATAATGAGAAGCAGCTGCCGACGGTGGGTGTGAG GTGTCACGGTGGTACGTGGGAGAGTAGTGGGAGTGGACCTGATCACCAGAGGAAGGCGATGGTGGTTGGGGTGGTTTAA
AA sequence Show only first row Show all	>Lus10018831 pacid=23144729 polypeptide=Lus10018831 locus=Lus10018831.g ID=Lus10018831.BGIv1.0 annot-version=v1.0 MKKKKESYSDTFLQHVALNFILAGRDTSSVALSWFFWLIIQNPSVEEKVLKELCTVLEDTRGADVEKWLDDPLDFEEVDRLVYLKAALSETLRLYPSVPQ DSKHVVSDDVLPDGTFLPAGSSVTYSIYAAGRMRSTWGDDCMEFRPERWMSPDGEKFVAHDSYKFVAFNAGPRICLGKDLAYLQMKSVVAAVLLRHRLTV AEGHKVEQKMSLTLFMKNGLMVNVGKRDLEETAARIRRVAGDANGNKGSNGGQNGNNEKQLPTVGVRCHGGTWESSGSGPDHQRKAMVVGVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00360		ATT1, CYP86A2	"cytochrome P450, family 86, s...		Lus10018831 [exp]	0	1
AT2G45970		CYP86A8, LCR	LACERATA, "cytochrome P450, fa...		Lus10018830 [exp]	2.0	0.9394
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Lus10005279 [exp]	8.7	0.8732
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Lus10013956 [exp]	13.5	0.8597
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Lus10008208 [exp]	17.7	0.8806
AT5G02540			NAD(P)-binding Rossmann-fold s...		Lus10025321 [exp]	29.2	0.8252
AT1G05560		UGT75B1, UGT1	UDP-GLUCOSE TRANSFERASE 1, UDP...		Lus10040590 [exp]	31.7	0.8690
AT2G28610	HD	PRS1, PRS, WOX3	WUSCHEL RELATED HOMEOBOX 3, PR...		Lus10023332 [exp]	34.1	0.8643
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10006610 [exp]	38.5	0.8235
AT1G32780			GroES-like zinc-binding dehydr...		Lus10033241 [exp]	48.7	0.8440
AT2G45970		CYP86A8, LCR	LACERATA, "cytochrome P450, fa...		Lus10017789 [exp]	49.1	0.8163

Compare expression of checked genes

Lus10018831 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.