Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01610 368 / 2e-123 ATGPAT4, GPAT4 glycerol-3-phosphate acyltransferase 4 (.1) AT4G00400 366 / 6e-123 AtGPAT8, GPAT8 glycerol-3-phosphate acyltransferase 8 (.1) AT2G38110 303 / 2e-98 ATGPAT6, GPAT6 glycerol-3-phosphate acyltransferase 6 (.1) AT3G11430 261 / 6e-82 ATGPAT5, GPAT5 glycerol-3-phosphate acyltransferase 5 (.1) AT5G06090 248 / 8e-77 ATGPAT7, GPAT7 glycerol-3-phosphate acyltransferase 7 (.1) AT1G06520 239 / 7e-73 ATGPAT1, GPAT1 glycerol-3-phosphate acyltransferase 1 (.1) AT3G11325 230 / 3e-71 Phospholipid/glycerol acyltransferase family protein (.1) AT1G02390 219 / 2e-65 ATGPAT2, GPAT2 ARABIDOPSIS THALIANA GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2, glycerol-3-phosphate acyltransferase 2 (.1) AT4G01950 212 / 5e-63 ATGPAT3, GPAT3 glycerol-3-phosphate acyltransferase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017794 [exp] 822 / 0 AT3G11430 392 / 5e-133 glycerol-3-phosphate acyltransferase 5 (.1) Lus10010741 [exp] 422 / 2e-144 AT2G38110 555 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10002500 [exp] 365 / 3e-122 AT2G38110 683 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10004833 [exp] 291 / 3e-94 AT2G38110 512 / 3e-180 glycerol-3-phosphate acyltransferase 6 (.1) Lus10007344 [exp] 285 / 4e-92 AT1G06520 251 / 2e-77 glycerol-3-phosphate acyltransferase 1 (.1) Lus10036684 [exp] 275 / 5e-87 AT2G38110 558 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10004711 [exp] 261 / 6e-82 AT3G11430 743 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Lus10002501 [exp] 243 / 3e-76 AT2G38110 330 / 2e-109 glycerol-3-phosphate acyltransferase 6 (.1) Lus10020767 [exp] 246 / 6e-76 AT1G06520 569 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G198100 [exp] 418 / 5e-143 AT2G38110 527 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.016G063900 [exp] 417 / 7e-143 AT2G38110 533 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.014G085500 [exp] 391 / 2e-132 AT4G00400 757 / 0.0 glycerol-3-phosphate acyltransferase 8 (.1) Potri.006G097800 [exp] 298 / 3e-96 AT2G38110 809 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.016G113100 [exp] 293 / 2e-94 AT2G38110 789 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.010G201200 [exp] 254 / 2e-79 AT3G11430 720 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Potri.008G058200 [exp] 253 / 8e-79 AT5G06090 704 / 0.0 glycerol-3-phosphate acyltransferase 7 (.1) Potri.005G202200 [exp] 251 / 9e-78 AT1G06520 650 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Potri.002G192600 [exp] 239 / 4e-73 AT4G01950 601 / 0.0 glycerol-3-phosphate acyltransferase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [flax] [poplar] Acyltransferase PF01553 [flax] [poplar] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10018832 pacid=23144677 polypeptide=Lus10018832 locus=Lus10018832.g ID=Lus10018832.BGIv1.0 annot-version=v1.0 ATGCAGTCGTCGCCGGAACTGAAGAAGCGGAGTTTTCCTTCGATCAAGTCATGTACGGGAACTTCGTACGATTCAATAGCCGCGGATCTTGATGGAACGC TTCTATGCTCTAGCAGCTCCTTTCCTTACTTCATGCTGGTAGCGGTGGAGGCAGGCAGCCTCCTCCGTGGCTTCGTCTTGCTCCTCTCCCTCCCGGCCAT CATTATATCCTACTTTTTCATCTCCGAAGCCTTCGGCATCCAGATTCTCATCTTCATCTCCTTCGCCGGCCTCAAGATCCGCGACATCGAACTCGCTTCC CGCGCCGTCTTGCCTCGGTTTTACGCGGCGGATGTGAGGGCGGACAGCTACGAGGTGTTCGACCGATGCAAGAAGAGGAAGGTAGTAGTAACGGCGAATC CGACGCTAATGGTGGAGCCGTTCGTGAAGGATTTTCTGGGCGGTGATAAAGTGCTAGGGACGGAGATTGAAGTGAATCCCAAGACAAAGAGAGCCACTGG ATTTGTGAAAAAGCCAGGCGTCTTGGTTGGAAAGTGGAAGAAGATAGCGATCATGAAGGAATTCGGGGAAGACGTTCCGGATCTGGGCATCGGTGACCGG ACAACCGATCACGATTTCATGTCCATTTGCAAGCGCATCGTCCGTTACACCTACGAGCTCCTTGGTATCCACTTAGTCATCAAAGGAACCCGACCTCCCC CTGCCGCAGCCGGCACCGCAGGTGGAAACCTATACGTCTGCAACCACCGCACTGCCCTGGACCCTATCATCATTGCCATAGCGCTCGGTCGCAAAGTCTC CTGCGTCACCTACAGCGTCAGTCGCCTCTCGAGGCTCCTCTCCCCTATCCCTGCTGTCGCCTTGACTAGAGACAGAGAAGCCGACGCTGCCATGATCAAG TCCCTCCTTGAAAAGGGGGATTTGGTGGTCTGCCCCGAGGGGACGACTTGTAGGGAGCCATTCTTGCTGAGATTCAGCGCTCTGTTTGCGGAGCTGAGCG ATAGGATTGTCCCAGTAGCGATGGATTGTAAGCAAGGGATGTTTTACGGGACGACGGTGAGAGGGGTGAAGTTTTGGGATGCTTACTTCTATTTCATGAA CCCGAGGCCGAGTTATGAGGTGACGTTTTTGGATCGGATTCCGGAGGAGATGACGGTGAAGGCTGGTGGGAAGTCGTCGATAGAGGTGGCGAATTACGTG CAGAGGATGTTGGGTGATGTGCTTGGGTTTGAGTGTACTGGGCTGACAAGGAAGGATAAGTACATGCTTCTTGGTGGGAACGACGGCAAAGTTGAGTCCA TTTTGAATGCGAAGAAGCACTAG
AA sequence Show only first row Show all	>Lus10018832 pacid=23144677 polypeptide=Lus10018832 locus=Lus10018832.g ID=Lus10018832.BGIv1.0 annot-version=v1.0 MQSSPELKKRSFPSIKSCTGTSYDSIAADLDGTLLCSSSSFPYFMLVAVEAGSLLRGFVLLLSLPAIIISYFFISEAFGIQILIFISFAGLKIRDIELAS RAVLPRFYAADVRADSYEVFDRCKKRKVVVTANPTLMVEPFVKDFLGGDKVLGTEIEVNPKTKRATGFVKKPGVLVGKWKKIAIMKEFGEDVPDLGIGDR TTDHDFMSICKRIVRYTYELLGIHLVIKGTRPPPAAAGTAGGNLYVCNHRTALDPIIIAIALGRKVSCVTYSVSRLSRLLSPIPAVALTRDREADAAMIK SLLEKGDLVVCPEGTTCREPFLLRFSALFAELSDRIVPVAMDCKQGMFYGTTVRGVKFWDAYFYFMNPRPSYEVTFLDRIPEEMTVKAGGKSSIEVANYV QRMLGDVLGFECTGLTRKDKYMLLGGNDGKVESILNAKKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11430		ATGPAT5, GPAT5	glycerol-3-phosphate acyltrans...		Lus10018832 [exp]	0	1
AT1G16060	AP2_ERF	ADAP	ARIA-interacting double AP2 do...		Lus10024101 [exp]	1.0	0.8877
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10017751 [exp]	6.3	0.7875
AT1G79810		PEX2, TED3, ATP...	ARABIDOPSIS PEROXIN 2, Pex2/Pe...		Lus10006832 [exp]	7.7	0.7369
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Lus10039256 [exp]	8.7	0.8508
AT2G27660			Cysteine/Histidine-rich C1 dom...		Lus10021061 [exp]	10.7	0.8277
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10015499 [exp]	11.2	0.8468
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10010741 [exp]	15.0	0.7794
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10021912 [exp]	15.8	0.6310
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10041878 [exp]	17.0	0.8344
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Lus10039255 [exp]	18.7	0.8263

Compare expression of checked genes

Lus10018832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.