Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61415 391 / 4e-128 ASK21 SKP1-like 21 (.1.2) AT2G45950 374 / 2e-121 ASK20 SKP1-like 20 (.1.2) AT2G45900 115 / 3e-26 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) AT3G61380 100 / 2e-21 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) AT3G21850 87 / 1e-19 ASK9 SKP1-like 9 (.1) AT4G34210 79 / 5e-17 ASK11 SKP1-like 11 (.1) AT1G01695 83 / 2e-16 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) AT4G00440 84 / 3e-16 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) AT5G42190 78 / 3e-16 SKP1B, ASK2 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) AT2G03170 76 / 5e-16 ASK14 SKP1-like 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017797 [exp] 924 / 0 AT4G00440 115 / 3e-26 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10017795 [exp] 578 / 0 AT3G61415 445 / 2e-157 SKP1-like 21 (.1.2) Lus10014770 [exp] 507 / 1e-172 AT3G61415 468 / 2e-166 SKP1-like 21 (.1.2) Lus10036365 [exp] 338 / 4e-108 AT3G61415 424 / 1e-149 SKP1-like 21 (.1.2) Lus10014776 [exp] 328 / 2e-98 AT4G00440 239 / 3e-67 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10036356 [exp] 319 / 5e-95 AT4G00440 241 / 6e-68 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10042850 [exp] 192 / 4e-50 AT2G45900 316 / 1e-94 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Lus10028147 [exp] 185 / 8e-50 AT2G45900 224 / 4e-65 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Lus10019794 [exp] 83 / 5e-18 AT1G75950 241 / 8e-83 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G085400 [exp] 449 / 2e-150 AT3G61415 406 / 5e-142 SKP1-like 21 (.1.2) Potri.002G160600 [exp] 448 / 5e-150 AT3G61415 426 / 5e-150 SKP1-like 21 (.1.2) Potri.012G143500 [exp] 407 / 5e-134 AT3G61415 394 / 4e-137 SKP1-like 21 (.1.2) Potri.015G146500 [exp] 395 / 1e-129 AT2G45950 350 / 3e-120 SKP1-like 20 (.1.2) Potri.014G084600 [exp] 159 / 1e-39 AT4G00440 395 / 4e-124 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.002G160000 [exp] 155 / 2e-38 AT4G00440 351 / 6e-107 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.002G018700 [exp] 84 / 2e-18 AT5G42190 249 / 6e-86 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.005G109900 [exp] 79 / 7e-17 AT5G42190 249 / 5e-86 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.005G243100 [exp] 77 / 5e-16 AT1G75950 244 / 2e-84 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Potri.009G135800 [exp] 75 / 2e-15 AT1G20140 215 / 9e-73 SKP1-like 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF03931 [flax] [poplar] Skp1_POZ Skp1 family, tetramerisation domain CL0033 [flax] [poplar] PF01466 [flax] [poplar] Skp1 Skp1 family, dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10018833 pacid=23144678 polypeptide=Lus10018833 locus=Lus10018833.g ID=Lus10018833.BGIv1.0 annot-version=v1.0 ATGCATTTCTTCACTTGCAATCCCTTGTGTCTCGCCCTTCTTCCTCAGATGATGAAGTCATATATCTGGCTCCAGACTGCTGATGGTGCGATTCAGCAAG TGGAACAAGAGGTTGCCATGTATTGTCCTATGATATGTCATGAAATAATACAGAAGGGCATGGGATCTTCCAAGAACTATGCTATTACTCTTCCTCAACG CGTCAGCCCAGCCATGTTGAGCCAAATTCTTGATTACTGCAGGTTTCATCAAGTACCAGGCCGGTCTAATAAGGAACGTAAAAGTTATGATGAGAGGTTC ATTCGGATGGATACAAAAAGGCTTTGTGAGTTGACATCAGCTGCTGATAGCCTCCAGCTTAAACCTTTGGTTGATCTCACAAGTCGTGCATTGGCACGGA TTATAGAGGGAAAAACCCCAGAGGAGATACGTGAGATATTTCATTTGCCAGATGATCTTACAGAGGAAGAGAAGTTGGAGCCTTTAAAAAACACAACTGA TGATCCACGGATACGACTTCTGAATCGGTTGTATGCAAAAAAGAGGAAAGAACTGAAAGAGAGGGAAAAACAAAAGAATATCGAGTCTGAAGAAGAGCGT GTAGATGAGCGATCAGTTGATGACTTGCTGTCGTTTATTAATGGAGAAAATGCAGATTCTAAAGGGGTTAAAACTTCCAAAAATAAAAAGAAAAATCGTC GGAGAAAGGATCAGCAGAAGAGCACTCACGTTGATCAAACTTCTGAATCACACCAAAAGGACTCAAGTAGCTTTGGTTGTTCAGGCCACACTGACGTGGA TGATAATGAAACACATTCTGCTCAGAGTGAGACGTCAAGGTTACAAGATGCAGAAGATGAAGTTCTTGCTCGTAAAGTGGATCTTGATGATGTTGATCTT GATGATGAGATTGATCCAGCATTAAAGGAAAAAATTGATAGGGAAGTGGAAGATTTTGCACGGAGATTGAACTCAGACTGGCCTGAGAGGATGCAGGAGC TTCTATCTTTGGGTCAAGAGAGGAATCCAACTCACCTTTCTAGCAACGGCAATGGTAGCATGAGAAATGACAGAGGCACTAGGAAACAGAAGAATATGCA TAACATGGAGAAGCTGGATGTTGACAGAAACGATCAGGATGGTGAAGAAAATATGGTTGATAAGCGTAGACCGAGTGTGAAGGAGCTCATAGAGGAAGAT TTGTTGAGTGAGTTATTGTCCAAGAGTGATACAATGAGTGCTGAAGTCGGATTCATATCGGAGAGGAACCGGACACGGGCAGGCAAGACAACAAGTCACA GGAAAGGTTCTCAGGTAAACCTTACTACCAGACCTCCTGCTCAACTGCCTTATCCCCACAACTCACAAGTTGTTGATGATCAAAAGCAGAGGTCTTCACT GAGGAACAAGTCTGATAAACTAGCAAACCTTGATCTAGAAACTGACCAACAGTCAAAGCCACCTGTAGGAAGTAATGTAGCAGAACAGGAGAACTGTGAG TCAAAGCAAGCCAACGATCATTCAGCAAAAAACCAGCACAAATTCTTCAGGAGGAAGTCCAAGTCCTTTGATAAGACCGTTTCCATTGATAATAAGTTGA AGCCTGGATCTGAAACAAACAAGGGGGGACTGGAAAGAAGCAGTTCCCATTTTTCCTTCACTGAAATTAAAAGGAAGTTTAAAAATGCTATGGGAAGAGA GCAACTACTAGAGGGTGACAGAAGAAGTTTGTCAGGCAAGGAACACTTCCTCGTCGAAACAATTGCAAAACCAGCCATGAGTTTCAGGAAAGTAGAGAAT GATGCTACCAGACCCATTGAATGTTGTAACGAAGGGAAAGAGCAATATCAAGTTACTAATCTTTCTAAGCCAAGACAATCTAACATCTACGTTGAACCTG ATAAACATACTACAGAGATGTCAAGTAATGGTCTTACTACAGAAGGAGTGAAAAAGAATGCAAACCCCCTTTCCAGGATTCTCTCTTTCCCAGACCACAA TTGTTCTTCTATTGGCAGTTCAGGAATCGATCTTTGGTATGGTTTCTTACCGGCACGAATGAGCTTCCCAAACATGGAAAAATTTCAGAGGCTGGAAAGT CATCTGGGTCGAATATCATTGAGCTCAGAGCTTTCAGATGAAGATCATGAAAAAGCACTGCAGGTTTCTTCAGAGCCAGTTTCAACTGAGCTTATTATTG ATGATGGTGAAGAAATGAATGTAGATGAGGTGACTCCTCAAGGTTGTTCTGAGAATGAATTGTCCAGTCAGATGGTAGCTTCAGAAGAGATCAATATCAG CCCAGGATCCACCAGTACTTCACAATCTGTTGAACTTGCGGTACAACCCCTGACGATTCAGTTTGAAAAGATTGGTTCGAAAAGTCGTACAAAAGATGCA AAACATTACATAGTTGAGTTCATAAAGAAGGTAGTCGTATCAACTAGTCTAAACTGGGAGGAGTTGTCAGATTCTCCACCAGACCAGATTCTTGATCCAT CAAGTTGTCAAGAGATGGAGTTGTTCCCTAACCAGCTTTGTCAAGACAAGCAACTCCTCTTCGATTGTATCGATGAAGTCCTTGTGGAGCTTTACGATTG CAAGTACTTGAGTTGTCACCCTGCAGGATTATCTCGTCGCATTCGACCAGTAGTCATGGATATGGAGAATACTGTTCAGGAGGTATGGGAAAGAGTTCAT TGGCACCTCATGCCATTTCCAGAGCCCCATAGTTTGGAACAGATTGTAGAGAGAGACGTCATGCAGGTTAATAAGAAGAGCAGCAGCTCATGGATGGAGC TTGGACATGATAGTCAGACCGTCCTAGTCGAAATTAGTGAAGCTATTTTTGAAGATGTTGTTGAAGGAATCATACGTAGCTCTGTAAATAGACGTGGAAG AAAATGGAGGATATGTAGATAG
AA sequence Show only first row Show all	>Lus10018833 pacid=23144678 polypeptide=Lus10018833 locus=Lus10018833.g ID=Lus10018833.BGIv1.0 annot-version=v1.0 MHFFTCNPLCLALLPQMMKSYIWLQTADGAIQQVEQEVAMYCPMICHEIIQKGMGSSKNYAITLPQRVSPAMLSQILDYCRFHQVPGRSNKERKSYDERF IRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKEREKQKNIESEEER VDERSVDDLLSFINGENADSKGVKTSKNKKKNRRRKDQQKSTHVDQTSESHQKDSSSFGCSGHTDVDDNETHSAQSETSRLQDAEDEVLARKVDLDDVDL DDEIDPALKEKIDREVEDFARRLNSDWPERMQELLSLGQERNPTHLSSNGNGSMRNDRGTRKQKNMHNMEKLDVDRNDQDGEENMVDKRRPSVKELIEED LLSELLSKSDTMSAEVGFISERNRTRAGKTTSHRKGSQVNLTTRPPAQLPYPHNSQVVDDQKQRSSLRNKSDKLANLDLETDQQSKPPVGSNVAEQENCE SKQANDHSAKNQHKFFRRKSKSFDKTVSIDNKLKPGSETNKGGLERSSSHFSFTEIKRKFKNAMGREQLLEGDRRSLSGKEHFLVETIAKPAMSFRKVEN DATRPIECCNEGKEQYQVTNLSKPRQSNIYVEPDKHTTEMSSNGLTTEGVKKNANPLSRILSFPDHNCSSIGSSGIDLWYGFLPARMSFPNMEKFQRLES HLGRISLSSELSDEDHEKALQVSSEPVSTELIIDDGEEMNVDEVTPQGCSENELSSQMVASEEINISPGSTSTSQSVELAVQPLTIQFEKIGSKSRTKDA KHYIVEFIKKVVVSTSLNWEELSDSPPDQILDPSSCQEMELFPNQLCQDKQLLFDCIDEVLVELYDCKYLSCHPAGLSRRIRPVVMDMENTVQEVWERVH WHLMPFPEPHSLEQIVERDVMQVNKKSSSSWMELGHDSQTVLVEISEAIFEDVVEGIIRSSVNRRGRKWRICR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Lus10018833 [exp]	0	1
AT2G18850			SET domain-containing protein ...		Lus10025463 [exp]	29.7	0.5996
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Lus10024902 [exp]	49.3	0.5644
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Lus10019891 [exp]	95.2	0.5777
AT2G34930			disease resistance family prot...		Lus10016337 [exp]	111.3	0.5611
AT4G17140			pleckstrin homology (PH) domai...		Lus10039773 [exp]	118.4	0.5533
AT5G40410			Tetratricopeptide repeat (TPR)...		Lus10005638 [exp]	206.7	0.5283

Compare expression of checked genes

Lus10018833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.