Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01650 678 / 0 ATSPPL4 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) AT1G63690 651 / 0 ATSPPL2 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) AT2G43070 393 / 5e-132 ATSPPL3 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) AT1G05820 338 / 1e-110 ATSPPL5 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5, SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (.1.2) AT4G33410 102 / 9e-24 ATSPPL1 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) AT2G03120 96 / 1e-21 ATSPP signal peptide peptidase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031104 [exp] 679 / 0 AT1G63690 872 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10017796 [exp] 631 / 0 AT1G01650 802 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10036364 [exp] 622 / 0 AT1G01650 608 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10014769 [exp] 613 / 0 AT4G00370 662 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Lus10024653 [exp] 593 / 0 AT1G63690 744 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10032285 [exp] 501 / 4e-171 AT1G63690 713 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10001154 [exp] 398 / 7e-134 AT1G05820 563 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5, SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (.1.2) Lus10035484 [exp] 316 / 6e-104 AT1G63690 364 / 3e-122 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10019557 [exp] 129 / 2e-33 AT2G43070 245 / 2e-77 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G160500 [exp] 722 / 0 AT1G01650 838 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Potri.014G085300 [exp] 712 / 0 AT1G01650 810 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Potri.003G128500 [exp] 687 / 0 AT1G63690 857 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Potri.001G103100 [exp] 674 / 0 AT1G63690 829 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Potri.002G232200 [exp] 388 / 4e-130 AT2G43070 626 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.014G150000 [exp] 380 / 7e-127 AT2G43070 570 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.012G142400 [exp] 96 / 3e-21 AT4G33410 633 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) Potri.015G145600 [exp] 94 / 8e-21 AT4G33410 614 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) Potri.001G276700 [exp] 92 / 2e-20 AT2G03120 550 / 0.0 signal peptide peptidase (.1) Potri.009G071600 [exp] 92 / 4e-20 AT2G03120 542 / 0.0 signal peptide peptidase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0130 [flax] [poplar] Peptidase_AD PF04258 [flax] [poplar] Peptidase_A22B Signal peptide peptidase CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10018834 pacid=23144669 polypeptide=Lus10018834 locus=Lus10018834.g ID=Lus10018834.BGIv1.0 annot-version=v1.0 ATGGGAAAGTTGGAATCTTTGTGGGTGTTGTTTGTGGCTTTCTTGGCTTTAAGTCCAAGTTTTTGTTCCGCTGGAGATATAGTACATCCAGACGATAAGG CTCCCAGCAAGCCTGGATGCGACAATAACTTTGTTCTGGTAAAAATTCCCACTTGGGTTGATGGGGTGGAAGACACGGAGTATGTTGGTGTTGGTGCTCG ATTTGGGCCAACACTAGAGTCGAAAGAACAACATGCCAATAAGTCCAGGCTTGCTTTGGCTGACCCTCCTGATTGTTGCAGCACACCCAAGAATAAGCTT ACAGGGGAGGTAATTGTGGTGCACCGTGGAAACTGCAGCTTCACAACTAAGTCAAATATTGCTGAGGCCGCTGGTGCTTCAGCCATTCTGATTATAAACA ATCGAACGGGTGAAATTTTATTCTGCATAGATCCACCTTCGTCACCATCTTATGTGCTTCTTTGGCGTAATGCTGTCGTCACCATCTTATGTGCTTCTTA TTGGTCTGCCTGGAGTGCAAAAGAGGCAGCGGTAGAGCATGAAAAGCTTCTAAAGGATGGACTAGACGTATGCCAGGAACGTATTTGTGCTAGCAGCATA GTTAACATTAACGTCACCTCTGCAGTTCTGTTTGTTGTGGTGGCTTCATGTTTCTTAGTTATGCTATACAAACTCATGTCATTCTGGTTTATCGAGGTTT TGGTAGTTCTCTTCTGCATTGGTGGTGTTGAGTGCAGTTTCAGATGGTTTCAACATGCTGCTGAATCATCTCTTAAAGTCCCCTTGTATGGAGCTGTCTC ATATTTGACATTAATCGTCTCTCCCTTCTGCATAGCCTTCACTGTAGTGTGGGCAGTATATCGCCGGCTTTCGTTTGATTGGATAGGTCAAGATATCCTT GGCATTGCACTGATCGTTACAGTTCTTCAGATTGTTCATGTACCGAACCTCAAGATTGGTACAGTTCTTCTCAGTTGTGCCTTCCTCTATGACATCTTCT GGGTGTTTGTTTCCAAATACTGGTTCCACGAGAGTGTCATGATCGTGGTAGCTCGCGGTGATAGGAGTGGAGAGGATGGCATACCAATGCTTCTGAAAAT CCCTAGGATGTTCGATCCATGGGGTGGATATAGTGTCATTGGCTTTGGTGACATCATATTACCAGGCCTGGTTGTTGCTCTGTCGTTAAGATACGACTGG CTGGCAAATAAGACTCTTAAAAATGGGTACTTTGTATGGGCAATGACTGCATATGGCTTAGGTCTCCTAGTGACATATATAGCTCTGAACCTGATGGATG GCCATGGCCAGCCTGCGCTTCTTTACATCGTTCCTTTTACATTAGGAACGTTTCTGACGCTGGGGAAGAAGAGAGGAGATCTAAAGATACTATGGACAAG AGGGGAACCAGAGAGGCCTTGTCCACACCATCAACTGATGCACCACTCTCAATCTCAATTAAATCAACAATAA
AA sequence Show only first row Show all	>Lus10018834 pacid=23144669 polypeptide=Lus10018834 locus=Lus10018834.g ID=Lus10018834.BGIv1.0 annot-version=v1.0 MGKLESLWVLFVAFLALSPSFCSAGDIVHPDDKAPSKPGCDNNFVLVKIPTWVDGVEDTEYVGVGARFGPTLESKEQHANKSRLALADPPDCCSTPKNKL TGEVIVVHRGNCSFTTKSNIAEAAGASAILIINNRTGEILFCIDPPSSPSYVLLWRNAVVTILCASYWSAWSAKEAAVEHEKLLKDGLDVCQERICASSI VNINVTSAVLFVVVASCFLVMLYKLMSFWFIEVLVVLFCIGGVECSFRWFQHAAESSLKVPLYGAVSYLTLIVSPFCIAFTVVWAVYRRLSFDWIGQDIL GIALIVTVLQIVHVPNLKIGTVLLSCAFLYDIFWVFVSKYWFHESVMIVVARGDRSGEDGIPMLLKIPRMFDPWGGYSVIGFGDIILPGLVVALSLRYDW LANKTLKNGYFVWAMTAYGLGLLVTYIALNLMDGHGQPALLYIVPFTLGTFLTLGKKRGDLKILWTRGEPERPCPHHQLMHHSQSQLNQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10018834 [exp]	0	1
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10017796 [exp]	1.0	0.9260
AT1G13310			Endosomal targeting BRO1-like ...		Lus10034281 [exp]	3.2	0.8223
AT5G08710		RUG1	RCC1/UVR8/GEF-like 1, Regulato...		Lus10035957 [exp]	3.7	0.8344
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Lus10016791 [exp]	3.9	0.8252
AT4G12010			Disease resistance protein (TI...		Lus10015648 [exp]	6.3	0.8094
AT1G78280			transferases, transferring gly...		Lus10036482 [exp]	6.5	0.8170
AT1G18660			zinc finger (C3HC4-type RING f...		Lus10015722 [exp]	8.5	0.8081
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10005988 [exp]	11.6	0.8105
AT1G80940			unknown protein		Lus10024095 [exp]	12.0	0.7917
AT4G22260		IM1, IM	IMMUTANS, Alternative oxidase ...		Lus10002872 [exp]	13.7	0.7863

Compare expression of checked genes

Lus10018834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.