Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45910 489 / 2e-161 U-box domain-containing protein kinase family protein (.1) AT1G78940 290 / 3e-87 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) AT1G16760 289 / 4e-86 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G49060 289 / 1e-85 U-box domain-containing protein kinase family protein (.1.2) AT5G26150 286 / 2e-85 protein kinase family protein (.1) AT1G72760 285 / 4e-85 Protein kinase superfamily protein (.1) AT1G17540 285 / 4e-85 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G24370 280 / 2e-82 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G12000 275 / 1e-81 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G31230 275 / 5e-81 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036359 [exp] 796 / 0 AT2G45910 598 / 0.0 U-box domain-containing protein kinase family protein (.1) Lus10036362 [exp] 566 / 0 AT3G49060 895 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10014772 [exp] 563 / 0 AT3G49060 901 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10036363 [exp] 366 / 9e-116 AT2G45910 528 / 9e-178 U-box domain-containing protein kinase family protein (.1) Lus10017798 [exp] 322 / 2e-102 AT2G45910 169 / 4e-46 U-box domain-containing protein kinase family protein (.1) Lus10026439 [exp] 294 / 1e-89 AT5G12000 662 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10035712 [exp] 281 / 1e-85 AT1G16760 624 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10020185 [exp] 280 / 6e-85 AT2G24370 741 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024212 [exp] 285 / 3e-84 AT2G24370 780 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G160200 [exp] 588 / 0 AT2G45910 650 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.014G084900 [exp] 546 / 0 AT2G45910 857 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.002G160300 [exp] 360 / 6e-113 AT2G45910 559 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.012G143100 [exp] 327 / 3e-100 AT3G49060 706 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Potri.001G239100 [exp] 289 / 2e-86 AT2G45910 473 / 6e-156 U-box domain-containing protein kinase family protein (.1) Potri.009G030400 [exp] 291 / 3e-86 AT2G45910 398 / 5e-126 U-box domain-containing protein kinase family protein (.1) Potri.018G002400 [exp] 283 / 4e-84 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G078500 [exp] 278 / 2e-82 AT2G24370 824 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G001900 [exp] 278 / 5e-82 AT1G78940 757 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.006G225300 [exp] 275 / 3e-81 AT5G12000 749 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10018835 pacid=23144744 polypeptide=Lus10018835 locus=Lus10018835.g ID=Lus10018835.BGIv1.0 annot-version=v1.0 ATGTCGAGCAAATCACTAGTTGGACAAAAGGTGTACGTAGCAGTTGGAAAGGTTGTTCAAGACAGCAAGTCTGTGTTGATGTGGGCACTACACAACCATT CTGCCGCCGACGACATCTGCCTCATTCTCGTTCACCAACCGCCATCTCTTTCTAATGGAGGATGCTCTGGGATTCAGGACGAGGAGATCGAACGGGGTGG AGCTCATAAGATACTCGATCACTACATCTGCATTTGTAACAGCATGGGGCTAGCTATTCAGACAAAACCGAAAATTGATTTGTCCTTGCTTGTTGACTCA CAGTTCAAAGCTCATAAGTTGCTCATTGAGAACGATTCAGTTGTGAAGGGAATTCTGGACACCATTTCTAACTGTGGTATTAGACAACTTGTTATGGGGG CGGCATCTGACAAAAGCTATTCCAGGAATATGATGCAGATCAAGTCCAGAAAGGCGTTATCAGTCCACTGCCAGGCTTCTGTAGCTTGTCGAATCTATTT CGTCTGCACAGGTCGTCTTATCCATGTAAGGGAAGGGATCGCAGACATGAGCAACTACATAGAATCATACGGTCAACCACTGAGCTTGAGCCATTTACAT GAGCAGAAACCGACTACTCTTTCTAAATCCCAGTCAGCCGTTCATAGACAGAGCAGCAACTTCCTAGACCTCGTACATGGTTACTTCTACCGAGGAAGAA GTGTATCTGCGTCCACCACAGCGAGCATAGATGATTACTTCCGTGTGCCATCAACTCCTGAAGAAGTGTCGAACGAGTTTAATGATCATGAATCAAGCCC ACACAGCAACATCCTGTCACAGTGTTCTTCTGGTAGGATCACTACCAGTTCAAGCAGTGTGAGTAATAATGGCGTTTTCAGGTTGCAAGGAAGCCAGATG AGTATGGAGCTGCTGAACTCACATGACGAACCACTTGCTGACCATCCAAAACGAGCTAAGGGGAATCAGCCAATTCCAAAGAGGGAATCACTGGATGAGG CATTGAGACAAGCCACAGCTGATAAAGAAGCCTTCGAAGAGTTCATAAGCTTGAAGAGAGATGCGCTGGACGAAGCATTCCGTCGAGCCAAAGCCGAACA GGTTGCTGCCGAGGCCATAGAAAGGGCAAAAGGATTAGAGAACCTTGTTTCCGAAGAGCAGAAGCTGAGAAAAGAAAGAGAGGAGGCCTTAGATAAAGGG AAAGGGGAACTCGGCAAGGCCTTGGAAGAGAAGCTTCTGCTACAGGACCAAATTGCAGAGACAGCCCATAAGGTGAAGGATTTGGAGCAGGAAATCATCT CTGTCGTAGAAGTGCTGAAGAAGTGCAAGAAAGAACGTGATGAAACACAGATAGAGCGTGATAACGAGGTGAAGGAAGCAGAGGAGCTGAAGAAGAGCAT ATCGGAGCAAGCATCAAGTTCAACATCGACAGAAGCTGCAACCTTGTTGTTCACTAAATCAGATATTGAACAAGCGACTAACAACTACCATGAATCAGTC AAGATCGGAGAAGGCGGATTCGGCAACATTTACAGAGCTGAGCTCCAATATACACAAGTTGCTATCAAATTACTCACCCCAAATGGCTTGCAAGGGGCAT CCGAGTTTAATAAAGAGGTAGAAATTCTGAGCAAGGTGAGGCACCCAAACCTGGTGAGTCTCATCGGAGCCTGTCCTGAATCGTGTGCCCTAATTTACGA ATACCTCCCGAATGGAAGTCTCGAAGACCGACTCGAGTGCAAGGACAATTCCAAGCCGCTGTCATGGCGAATTCGACTCCGAATCGCCGCCGAGGTCTGC TCCGTACTCATCTTCCTCCAGTCCTGCAAACCGGATAGCATCGTCCACGGCGATGTGAAGCCTTCCAACATCCTCCTGGATGCCAATTTCGTCAGCAAGC TCAGCGACTTTGGGATCGCTCGCTTGCTCAAGTACAAGGAAGGCTCCTCTGCCAATCAGACGCTGATATGGAGGACTGATCCGAAGGGGACTCCGCCGTA CATAGATCCAGAGTTCTTCTACAGCGGGATTCTGACGTCCAAGTCTGATGTGTACTCGTTTGGGGTAGTTTTGATGCGGCTGTTGACAGGAAGATCAGCG ATAGGGTTAGTCGCGGAGGTGCAGTGCGCACTCAGTGACGGGAAATTGAAAGAGATTTTGGATGAATCGGCCGGAGAGTGGCCGCTGCCACGAGCGGAAG AGCTGGCTAAGTTGGCGGTTAGGTGCTGTGAGAAGCATCGGCGGAGGCGGCCGGATCTTGCGGCAGAAGTTTGGGAAGTGCTTAAGTACTTCTGCTTTTT CGGAAGACAGAGAGTGATGAAGTTGCTCCAAAGCAAATGA
AA sequence Show only first row Show all	>Lus10018835 pacid=23144744 polypeptide=Lus10018835 locus=Lus10018835.g ID=Lus10018835.BGIv1.0 annot-version=v1.0 MSSKSLVGQKVYVAVGKVVQDSKSVLMWALHNHSAADDICLILVHQPPSLSNGGCSGIQDEEIERGGAHKILDHYICICNSMGLAIQTKPKIDLSLLVDS QFKAHKLLIENDSVVKGILDTISNCGIRQLVMGAASDKSYSRNMMQIKSRKALSVHCQASVACRIYFVCTGRLIHVREGIADMSNYIESYGQPLSLSHLH EQKPTTLSKSQSAVHRQSSNFLDLVHGYFYRGRSVSASTTASIDDYFRVPSTPEEVSNEFNDHESSPHSNILSQCSSGRITTSSSSVSNNGVFRLQGSQM SMELLNSHDEPLADHPKRAKGNQPIPKRESLDEALRQATADKEAFEEFISLKRDALDEAFRRAKAEQVAAEAIERAKGLENLVSEEQKLRKEREEALDKG KGELGKALEEKLLLQDQIAETAHKVKDLEQEIISVVEVLKKCKKERDETQIERDNEVKEAEELKKSISEQASSSTSTEAATLLFTKSDIEQATNNYHESV KIGEGGFGNIYRAELQYTQVAIKLLTPNGLQGASEFNKEVEILSKVRHPNLVSLIGACPESCALIYEYLPNGSLEDRLECKDNSKPLSWRIRLRIAAEVC SVLIFLQSCKPDSIVHGDVKPSNILLDANFVSKLSDFGIARLLKYKEGSSANQTLIWRTDPKGTPPYIDPEFFYSGILTSKSDVYSFGVVLMRLLTGRSA IGLVAEVQCALSDGKLKEILDESAGEWPLPRAEELAKLAVRCCEKHRRRRPDLAAEVWEVLKYFCFFGRQRVMKLLQSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45910			U-box domain-containing protei...		Lus10018835 [exp]	0	1
					Lus10007802 [exp]	1.4	0.9519
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10022929 [exp]	3.2	0.9277
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Lus10028203 [exp]	3.7	0.9453
AT1G79400		ATCHX2	cation/H+ exchanger 2, cation/...		Lus10026156 [exp]	4.0	0.9111
AT3G11770			Polynucleotidyl transferase, r...		Lus10010357 [exp]	4.2	0.8974
					Lus10004778 [exp]	4.9	0.9340
AT2G31420	B3		Domain of unknown function (DU...		Lus10039058 [exp]	5.5	0.8997
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10018138 [exp]	5.5	0.9370
AT5G05570			transducin family protein / WD...		Lus10001254 [exp]	7.0	0.9114
AT2G44290			Bifunctional inhibitor/lipid-t...		Lus10033076 [exp]	7.3	0.9202

Compare expression of checked genes

Lus10018835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.