Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23340 329 / 3e-112 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G51310 328 / 5e-112 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G80330 125 / 3e-33 ATGA3OX4 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 4, gibberellin 3-oxidase 4 (.1) AT3G13610 124 / 1e-32 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G15550 121 / 2e-31 ATGA3OX1, GA4 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) AT1G55290 120 / 5e-31 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52820 118 / 1e-30 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G19010 118 / 2e-30 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT1G06620 117 / 5e-30 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G60980 116 / 2e-29 ATGA20OX4 gibberellin 20-oxidase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009663 [exp] 326 / 3e-111 AT4G23340 358 / 6e-124 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10017799 [exp] 168 / 3e-52 AT5G51310 108 / 1e-29 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10009025 [exp] 154 / 8e-45 AT5G51310 131 / 9e-38 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006759 [exp] 125 / 5e-33 AT4G21200 419 / 2e-147 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10011476 [exp] 124 / 2e-32 AT1G15550 412 / 1e-143 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10021002 [exp] 124 / 2e-32 AT3G19000 389 / 3e-135 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10015016 [exp] 124 / 3e-32 AT4G25420 494 / 3e-176 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10007640 [exp] 123 / 3e-32 AT4G21200 429 / 1e-151 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10031671 [exp] 124 / 4e-32 AT5G07200 508 / 1e-180 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G159500 [exp] 391 / 8e-137 AT4G23340 402 / 3e-141 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.003G128100 [exp] 368 / 1e-127 AT4G23340 458 / 2e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.003G106900 [exp] 365 / 2e-126 AT4G23340 392 / 1e-137 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.011G026700 [exp] 122 / 3e-32 AT4G21200 444 / 1e-157 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.005G184400 [exp] 122 / 8e-32 AT5G51810 380 / 5e-131 gibberellin 20 oxidase 2 (.1) Potri.005G184200 [exp] 121 / 1e-31 AT5G51810 383 / 1e-132 gibberellin 20 oxidase 2 (.1) Potri.018G033600 [exp] 121 / 1e-31 AT1G15550 328 / 2e-111 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.001G176600 [exp] 120 / 3e-31 AT1G15550 452 / 1e-159 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.006G247700 [exp] 120 / 4e-31 AT1G15550 328 / 2e-111 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.004G146100 [exp] 120 / 5e-31 AT3G19000 374 / 5e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10018836 pacid=23144689 polypeptide=Lus10018836 locus=Lus10018836.g ID=Lus10018836.BGIv1.0 annot-version=v1.0 ATGGTATTAGGAGAAGGAAGCAGTAGCAGTAGCAGTACTAGTACAGTCCAAGTACTCCCAGTGGTGGACATATCTCAGCCGTTGAATCCATCATCACTGT TATCTCTAGCTGATGCCTGCCAGAAATGGGGATTCTTCCATATCATCAACCATGGAATCCCCAGGAATCTTTACGACAGAATCTATTCCTTATCTCAGCA TTTCTTCAGCTTGCCTTGTCATTCGAAACTTGAACACTTGGGTCTCCAAACTTACACTCCAAACTTCATAGCCTCCCCTTTCTTCGAGAGCCTCCGTGTG TCTGGTCCGGACTTCTTCTCCTCTGCTCACTCCTCTGCCTCTCCCCTGCTCACTCCACCCATCTCTTCTGAATTCAGTGAGTTGGTTGAAGAGTACGGAA GCAAGATGACAGAGCTATCAAAACGAATCATGGCGATCCTGCTAACAATCCTCGGAAAAGGGTTCGACGAGAAGTTCCACGAATCCGAATTCGACAAGTG CCATGGATACCTGAGGGTGATCAACTACACCGTTCCTGCCGAAACTGACCCCGTTAACGAAGTAGAGGGGCTGGGGATGCACACGGATATGAGCTGCGTG ACGATTGTGTACCAAGACCAAATTGGTGGCCTCCAAGTTAAGTCGGAATCACTAGGCGGTGGTACGAAATGGATGGACATAAGACCTTCCGAGGAGACGC TTGTGGTGAACATTGGGGACATGTTGCAGGCTTGGAGCAACGACAAGTTCCGGTCGTCAGAGCACCGGGTGATGCTGTGCGGACGGCCACGGTTGTCTCT TGCCTTCTTCTGGTGTTTTGAGGATGAGAAAGTGATTCGGGCACCTGATGAAGTTGTGGGAGATGAGGGAAGAAGGGCTTATAGGTCATTTGTCTGCTCT GAATATCTGAGGTTTAGGGAGATCAAGAGTGAGAGAGGAAGGTTTGAGAAAGTTGGGTATACTGTCAGAGATTTTGCTAATGCTGATCTACTCACTGATT CTTCATAA
AA sequence Show only first row Show all	>Lus10018836 pacid=23144689 polypeptide=Lus10018836 locus=Lus10018836.g ID=Lus10018836.BGIv1.0 annot-version=v1.0 MVLGEGSSSSSSTSTVQVLPVVDISQPLNPSSLLSLADACQKWGFFHIINHGIPRNLYDRIYSLSQHFFSLPCHSKLEHLGLQTYTPNFIASPFFESLRV SGPDFFSSAHSSASPLLTPPISSEFSELVEEYGSKMTELSKRIMAILLTILGKGFDEKFHESEFDKCHGYLRVINYTVPAETDPVNEVEGLGMHTDMSCV TIVYQDQIGGLQVKSESLGGGTKWMDIRPSEETLVVNIGDMLQAWSNDKFRSSEHRVMLCGRPRLSLAFFWCFEDEKVIRAPDEVVGDEGRRAYRSFVCS EYLRFREIKSERGRFEKVGYTVRDFANADLLTDSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51310			2-oxoglutarate (2OG) and Fe(II...		Lus10018836 [exp]	0	1
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10000898 [exp]	1.7	0.9418
					Lus10025807 [exp]	20.6	0.9330
					Lus10013528 [exp]	26.1	0.9300
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10033072 [exp]	26.4	0.8706
AT3G24530			AAA-type ATPase family protein...		Lus10011097 [exp]	27.5	0.8598
					Lus10036646 [exp]	30.0	0.9294
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10002191 [exp]	30.2	0.9285
AT5G05490		SYN1 BP5, SYN1 ...	SYNAPTIC 1, DETERMINATE, INFER...		Lus10014204 [exp]	35.5	0.9275
AT1G02790		PGA4	polygalacturonase 4 (.1)		Lus10012489 [exp]	36.4	0.9282
AT4G22756		ATSMO1-2, ATSMO...	sterol C4-methyl oxidase 1-2 (...		Lus10004324 [exp]	41.9	0.9272

Compare expression of checked genes

Lus10018836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.