Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68570 542 / 0 Major facilitator superfamily protein (.1) AT5G01180 402 / 2e-134 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02040 401 / 8e-134 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 386 / 4e-128 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT3G54140 384 / 1e-127 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT1G69870 364 / 4e-119 NRT1.7 nitrate transporter 1.7 (.1) AT1G18880 341 / 2e-110 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT2G02020 333 / 3e-108 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT3G54450 328 / 3e-106 Major facilitator superfamily protein (.1) AT3G16180 327 / 4e-105 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017817 [exp] 949 / 0 AT1G68570 637 / 0.0 Major facilitator superfamily protein (.1) Lus10041466 [exp] 554 / 0 AT1G68570 850 / 0.0 Major facilitator superfamily protein (.1) Lus10030947 [exp] 405 / 1e-135 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10035516 [exp] 405 / 2e-135 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10040099 [exp] 399 / 4e-133 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011055 [exp] 396 / 7e-132 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10000670 [exp] 393 / 7e-131 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10021132 [exp] 384 / 4e-127 AT3G54140 814 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10018207 [exp] 385 / 1e-125 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G034000 [exp] 740 / 0 AT1G68570 656 / 0.0 Major facilitator superfamily protein (.1) Potri.016G032000 [exp] 661 / 0 AT1G68570 590 / 0.0 Major facilitator superfamily protein (.1) Potri.006G033900 [exp] 656 / 0 AT1G68570 607 / 0.0 Major facilitator superfamily protein (.1) Potri.010G126300 [exp] 550 / 0 AT1G68570 901 / 0.0 Major facilitator superfamily protein (.1) Potri.010G100200 [exp] 407 / 3e-136 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.011G120000 [exp] 403 / 9e-135 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.009G042400 [exp] 395 / 1e-131 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 391 / 2e-130 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111800 [exp] 388 / 5e-129 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 385 / 8e-128 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10018838 pacid=23144638 polypeptide=Lus10018838 locus=Lus10018838.g ID=Lus10018838.BGIv1.0 annot-version=v1.0 ATGATAACATATCTGACCCAAGTACTCAACTTACCCACGGTGAAGGCCTCCAATACACTTACCATCGTTGGTGGCACAGCCGGCTTCACACCTCTAATCG GGGCTCTCATTTCTGACTCTTTCGCTGGCCGCTTCTGGACCATCATCGTCTCTTCCATTATCTACGAGCTGGGAATGGTGAGCATCACAATCTCGGCCAC GCTACCATCACTCCGTCCACCAGCTTGCCCATCCCAGCAGAACTGCGAAGAAGCCTCTTCTAAACAGCTATTGTTTCTCTACATGTCACTCCTTCTCACC TCTTTAGGAAGCGGCGGAATCAAGCCTTGTGTCGTCACATTCGCGGCAGACCAATTCGACATGAGGAGATCGGCTGTGGTGTCTAGAGGGTGGAATTTCT TCAATTTGTATTACTTCAGCTTGGGGATAGCAACATTGACATCCTTGACAGTGGTGGTTTACATACAAGACAACGTTGGTTGGAACTGGGGACTTGGCAT CCCAACTATTGTCATGGCATTGTCAATAGTTTCTTTTGTACTTGGTTCTCCTCTTTATAACAAATTGAAGCCTGGAGGGAGCCCTGTTATCAGATTGGGA CAAGTCATAATTGCTTCCATCAAGAAGAGGAAAACGGTAGCGCCCCAAGACCCTCATCTTTTGTATCAGAACCGCCAACTTGATGCTCTCATTTCTGTCG ATGGAAGGCTGGCGCACACCAATCAGTTCAGGTGCCTAGACAAAGCAACAATAGTGACAGAGGAAGATTCAAGACAGATAAGCGAAGATGGTTCAGGGAA ACCTAACCTGTGGCGGCTGGCGACGGTGCATCGAGTAGAAGAACTGAAATCCATCATTAGGGTTTTCCCAATTTGGGCATCTGGGATTCTCATCGTGGCA GCGTCCTCCAATCTCCAAAGCTTTGTAATACTACAAGCCTTCACAATGGACCGTCGATTCCCCAATTCATCATCCTCCTTCAAAATTCCACCAGCCTCCC TATCAATCTTCAGCGTCCTAACAACGATGATCGGCCTCGTCCTATACGAGCGCCTATTCGTGCCGTTCGCCCGTCGATTCACCAAAAACCCAGTAGGAGT GACCTGCCTTCAGCGGATGGGTATCGGCGCAGTCATCAACATCATAGCCACAATCGTCTCTGCTTTCGTGGAGATGAAGAGGAAGAAAGTCGCTGCTAGA TACGGATTGCTTGACGACCCGAAAGCGATCATACCCATCAGCGTGTTCTGGCTGATTCCGCAGTATGTACTCCATGGAACTGCTGAGGTGTTCAGTTCCG TAGGGCACATTGAATTTTTGTACGATCAGTCGCCAGAGAGTATGAGGAGTACGGCGTTGGCGCTATACTCTTTGACACTTTCGTTTGGGAACTATATCGG GACAGGGTTGGTGTCTGCGGTACATAAGTATACGGGTAGTGAGGAGAATTGGCTACCAGATAGGAATTTGAACAGGGGGAAATTGGATTACTATTACTGG ATGGTTACGGGGATTCAAGTTGTCAACTTTGGGTATTACTTGGTTGTTGCGTGGTTATATACTTGGAAGCCAGTGGAAGAAGTCAAGGATGAAGATGAAG AGTAG
AA sequence Show only first row Show all	>Lus10018838 pacid=23144638 polypeptide=Lus10018838 locus=Lus10018838.g ID=Lus10018838.BGIv1.0 annot-version=v1.0 MITYLTQVLNLPTVKASNTLTIVGGTAGFTPLIGALISDSFAGRFWTIIVSSIIYELGMVSITISATLPSLRPPACPSQQNCEEASSKQLLFLYMSLLLT SLGSGGIKPCVVTFAADQFDMRRSAVVSRGWNFFNLYYFSLGIATLTSLTVVVYIQDNVGWNWGLGIPTIVMALSIVSFVLGSPLYNKLKPGGSPVIRLG QVIIASIKKRKTVAPQDPHLLYQNRQLDALISVDGRLAHTNQFRCLDKATIVTEEDSRQISEDGSGKPNLWRLATVHRVEELKSIIRVFPIWASGILIVA ASSNLQSFVILQAFTMDRRFPNSSSSFKIPPASLSIFSVLTTMIGLVLYERLFVPFARRFTKNPVGVTCLQRMGIGAVINIIATIVSAFVEMKRKKVAAR YGLLDDPKAIIPISVFWLIPQYVLHGTAEVFSSVGHIEFLYDQSPESMRSTALALYSLTLSFGNYIGTGLVSAVHKYTGSEENWLPDRNLNRGKLDYYYW MVTGIQVVNFGYYLVVAWLYTWKPVEEVKDEDEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68570			Major facilitator superfamily ...		Lus10018838 [exp]	0	1
AT1G67785			unknown protein		Lus10042077 [exp]	5.3	0.8337
AT3G01130			unknown protein		Lus10042059 [exp]	21.6	0.8073
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Lus10032272 [exp]	22.4	0.7398
AT4G09140		ATMLH1	ARABIDOPSIS THALIANA MUTL-HOMO...		Lus10034734 [exp]	29.2	0.7489
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Lus10026861 [exp]	32.3	0.7067
AT5G51480		SKS2	SKU5 similar 2 (.1)		Lus10027207 [exp]	38.9	0.7277
AT5G09630			LisH/CRA/RING-U-box domains-co...		Lus10007106 [exp]	52.1	0.7408
AT5G37720		DIP2, ALY4	interacting with DNA-binding d...		Lus10010982 [exp]	62.4	0.7360
AT2G35360			ubiquitin family protein (.1)		Lus10000895 [exp]	68.5	0.7260
AT4G35987			S-adenosyl-L-methionine-depend...		Lus10028446 [exp]	71.6	0.7318

Compare expression of checked genes

Lus10018838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.