Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11610 1312 / 0 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G00700 1137 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G57880 1115 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G51570 1090 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G12970 1071 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT3G61300 1070 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G06850 1032 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G22610 1008 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G48060 983 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G04150 924 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000605 [exp] 1348 / 0 AT4G11610 1634 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10016280 [exp] 1116 / 0 AT3G57880 1499 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10012026 [exp] 1115 / 0 AT3G57880 1496 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 1022 / 0 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10023823 [exp] 1015 / 0 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10001538 [exp] 941 / 0 AT1G22610 1425 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10011271 [exp] 890 / 0 AT1G04150 1187 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10037479 [exp] 746 / 0 AT5G48060 866 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10033097 [exp] 744 / 0 AT1G74720 1566 / 0.0 QUIRKY, C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G081700 [exp] 1479 / 0 AT4G11610 1422 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.002G158000 [exp] 1475 / 0 AT4G11610 1400 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.001G105400 [exp] 1371 / 0 AT4G11610 1567 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.003G125900 [exp] 1346 / 0 AT4G11610 1543 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.001G271400 [exp] 1109 / 0 AT5G48060 1481 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G049100 [exp] 1105 / 0 AT3G57880 1425 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.006G058900 [exp] 1104 / 0 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G015700 [exp] 1058 / 0 AT5G12970 1295 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.T085601 [exp] 1055 / 0 AT5G12970 1315 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.003G210801 [exp] 1055 / 0 AT5G12970 1300 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0484 [flax] [poplar] Peroxisome PF08372 [flax] [poplar] PRT_C Plant phosphoribosyltransferase C-terminal
Representative CDS sequence Show only first row Show all	>Lus10018839 pacid=23144712 polypeptide=Lus10018839 locus=Lus10018839.g ID=Lus10018839.BGIv1.0 annot-version=v1.0 ATGAGTAATCTGAGACTGGGCGTGGAGGTTGTAAGTGCTCAACAACTTGTGGCCAAGGAGAAAGAAGGTGTACCAAAATCCAATGCTTTTGTGGAGATCC AATTTGATAATCACAAGTTCAAAACCAGCATCAAGGACGTCAACAATCCTGTTTGGAATGAGAAGTTCTACTTCAACATCTCTGAACCAAGCAACCTTCC AAACCTCACTCTTGATGCCTTTGTGTTCAACCACAACGCAGAAACAAACTCCTCCAAGTCATCATGCCTTGGTAAAGTCCGTCTCACTAACACATCGTTC GTCCCCTTTTCAGATGCCCTTGTCTTGCACTACCCTTTGGAAAAGCATCGCCTTTTCTCTTCGGTCAAAGGAGAGCTCGCCTTGAAAGTCTTCCTCACCG ATGACCCAAAACTCACATCCTTTTCCTCCTCCATTGATCCAATTCCTCAACCCTTCAAAGAACCAAACCGCCAAAATCATTCAAACCCAGTCCAGAAGTT CTTCTCAAGGGATAATAGAAGTGGCACAAGGCACACATTTCACCATCTCCCAAACAACAAAGACAAACCTCAGCCAAAGCCAGCTGCTGAACCACAAATA AGTTATGCTGCTCATGAGATGAAATCCGGTCCATCAGCTCCGAGAACTGTTCGTATGTTCCCACAACATGTTCCTCCTCCGGATTATTCGCTCAAGGAGA CGAGTCCTTATCTAGGAGGAGGGAGAGTTGTGGGTGGGAGGGTTATACATAGAGATAGACCTTCAGGAACTTACAGTCTTGTGGAAGAAATGAGGTACCT TTATGTTAGAGTTGTTAAAGCTCATGATCTTCCTCATAAGGATATCACTGGTGGGCTCGATCCTTACGTTGAAGTGAGGGTTGGCAACTACAAAGGGAGA ACACAGTACTTTGAGAAGAAGCAAAACCCTGAGTGGAATGAGGTGTTTGCATTTGCAAGAGATAGAGTGCAGTCAACTGTTCTTGAAGTAGTGGTCAAGG ATAAAGACACTTTGTTAGATGACTATGTTGGGTTTGTGAGGATCGACATGAACGAGATTCCCACTCGAGTTCCGCCTGATAGTCCTTTAGCTCCTGAATG GTACCGTCTCCAATCCGACAAGAGAGGTGATAAGAGGTTAGGAGAGCTTATGCTTGCTGTCTGGTATGGTACTCAAGCTGATGAGGCCTTTCCTGATGCT TGGCACTCTGATGCTATTAATCCTTCAGATAGTTCATCCATGGCATCTTTGCAGATACGTTCAAAAGTTTATCACTCTCCGAGGCTATGGTATGTTCGAG TTAATGTGATCGAGGCACAAGATTTGATCGTGCAAGATAAGAACCGGTTCCCGGATGCATATGTGAAGGTACAATTAGGTAACCAGATAATGAGGACAAA GATGATTCAGAGTCGGACGACAAATCCTGTATGGAATGAGGATTTGATGTTTGTTGCTGCTGAGCCCTTTGATGAGCATTTGATACTCTCGGTTGAAGAC CGTGTTGGACCGAACAAAGATGAGAGCATTGGCAAGGTTGTTATTCCTTTGCATGCTGTTGAGAAGCGTGCGGACGACAGATTCGTTCGTAGCAGATGGT TCAATCTCGAGAAGTCGATTTCTGATGCTATGGATGGAAAGGAAGCTAAGAGAGACAGGTTTTCAAGCAGACTCCATTTAAGAGTGGTACTTGATGGAGG GTATCATGTACTGGATGAGCCTATACACTACAGCAGTGATCTTAGACCGACAGCGAAACAACTTTGGAAGTCATCAATTGGTGTGCTTGAGCTCGGAATT CTGAATGCTGAAGGGATTCATCCCATGAAAACTAGAGATGGAAAGGGGACTTCAGATACCTACTGTGTGGTTAAATATGGCCCGAAATGGGTCAGGACTC GAACCATCATCGACAACCAAAGCCCCAAGTTCAATGAGCAGTACACATGGGAAGTTTATGATCCTGCAACGGTTCTTACCGTGGGGGTCTTTGACAATAG CCAGATCGGCAGCAGTGGCTCGTCGAATAATGGAAACACTCTCAGAGATGCAAAAATCGGTAAGGTACGAATAAGGCTCTCGACTCTCGAAACGGGACGA ATCTACACACATTCGTATCCATTGCTAGTCCTCCACCCTTCTGGTGTGAAGAAGATGGGTGAATTGCATCTAGCCATCCGGTTCTCATACACATCCTTCT CAAACATGATGTACCTTTACTCGAAGCCTCTCCTCCCCAAGATGCACTACGTGAAGCCATTGGCCATAACACAGCAAGATATGCTACGCAACCATGCAGT GAACATGGTTGCAGTGAGGCTCAGCCGGGCTGAGCCTCCTTTGAGAAAGGAAGTCATAGAGTACATGACTGATGCACATTCCCATCTATGGAGCATGAGG AAGAGCAAGGCCAACTTCTTTAGGCTGATGTCAGTATTCTCCGGTCTATTCACGATAGGAAAATGGTTCGGAGACGTGTGTATGTGGAGGAACCCCGTGA CAACAGTTCTGGTCCACCTCTTATTTGTGATGCTGGTATGCTTTCCGGAGCTGATCCTCCCAACGGTGTTCCTATACATGTTCCTAATCGGGATATGGAA CTATAGGTTTCGGCCAAAGTACCCTCCTCACATGAACACCAGGATGTCGTATGCAGATGTTGTGCACCCTGATGAACTTGATGAGGAGTTTGACACATTC CCAACGACGAAAAATGCAGACATAGTAAGGATGAGGTATGATCGGCTTAGGAGCGTGGCGGGGAGGATACAGACAGTGGTAGGGGATGTGGCTACTCAAG GGGAAAGGATACAAGCACTGCTGAGCTGGAGAGACCCGCGTGCCACGTCCATATTTGTGACGTTTTGCCTTGTGGCTGCTGTCGTTTTGTATGGAACGCC ATTCCAAATTTTGGCACTTATTGGTGGTGTTTATGCAATGAGGCATCCCAGGTTCAGGCATAAGACACCTGCTGCCCCTCTTAATTTCTTCAGACGCCTG CCGGCTAGGACTGACAGTATGTTGTGA
AA sequence Show only first row Show all	>Lus10018839 pacid=23144712 polypeptide=Lus10018839 locus=Lus10018839.g ID=Lus10018839.BGIv1.0 annot-version=v1.0 MSNLRLGVEVVSAQQLVAKEKEGVPKSNAFVEIQFDNHKFKTSIKDVNNPVWNEKFYFNISEPSNLPNLTLDAFVFNHNAETNSSKSSCLGKVRLTNTSF VPFSDALVLHYPLEKHRLFSSVKGELALKVFLTDDPKLTSFSSSIDPIPQPFKEPNRQNHSNPVQKFFSRDNRSGTRHTFHHLPNNKDKPQPKPAAEPQI SYAAHEMKSGPSAPRTVRMFPQHVPPPDYSLKETSPYLGGGRVVGGRVIHRDRPSGTYSLVEEMRYLYVRVVKAHDLPHKDITGGLDPYVEVRVGNYKGR TQYFEKKQNPEWNEVFAFARDRVQSTVLEVVVKDKDTLLDDYVGFVRIDMNEIPTRVPPDSPLAPEWYRLQSDKRGDKRLGELMLAVWYGTQADEAFPDA WHSDAINPSDSSSMASLQIRSKVYHSPRLWYVRVNVIEAQDLIVQDKNRFPDAYVKVQLGNQIMRTKMIQSRTTNPVWNEDLMFVAAEPFDEHLILSVED RVGPNKDESIGKVVIPLHAVEKRADDRFVRSRWFNLEKSISDAMDGKEAKRDRFSSRLHLRVVLDGGYHVLDEPIHYSSDLRPTAKQLWKSSIGVLELGI LNAEGIHPMKTRDGKGTSDTYCVVKYGPKWVRTRTIIDNQSPKFNEQYTWEVYDPATVLTVGVFDNSQIGSSGSSNNGNTLRDAKIGKVRIRLSTLETGR IYTHSYPLLVLHPSGVKKMGELHLAIRFSYTSFSNMMYLYSKPLLPKMHYVKPLAITQQDMLRNHAVNMVAVRLSRAEPPLRKEVIEYMTDAHSHLWSMR KSKANFFRLMSVFSGLFTIGKWFGDVCMWRNPVTTVLVHLLFVMLVCFPELILPTVFLYMFLIGIWNYRFRPKYPPHMNTRMSYADVVHPDELDEEFDTF PTTKNADIVRMRYDRLRSVAGRIQTVVGDVATQGERIQALLSWRDPRATSIFVTFCLVAAVVLYGTPFQILALIGGVYAMRHPRFRHKTPAAPLNFFRRL PARTDSML

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Lus10018839 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10028639 [exp]	1.0	0.9443
AT1G77480			Eukaryotic aspartyl protease f...		Lus10018146 [exp]	1.7	0.9013
AT1G69840			SPFH/Band 7/PHB domain-contain...		Lus10037213 [exp]	3.7	0.8841
					Lus10025204 [exp]	4.9	0.9078
AT1G72470		ATEXO70D1	exocyst subunit exo70 family p...		Lus10013163 [exp]	6.6	0.8740
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10022812 [exp]	6.9	0.8877
AT1G59710			Protein of unknown function (D...		Lus10030804 [exp]	8.9	0.8835
AT2G23810		TET8	tetraspanin8 (.1)		Lus10008891 [exp]	12.0	0.8713
AT3G20410		CPK9	calmodulin-domain protein kina...		Lus10040071 [exp]	12.2	0.8688
AT3G53810			Concanavalin A-like lectin pro...		Lus10016506 [exp]	12.2	0.8753

Compare expression of checked genes

Lus10018839 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.