Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45820 132 / 6e-39 Remorin family protein (.1) AT3G61260 132 / 1e-38 Remorin family protein (.1) AT5G23750 115 / 3e-32 Remorin family protein (.1.2) AT3G48940 107 / 3e-29 Remorin family protein (.1) AT1G63295 55 / 1e-09 Remorin family protein (.1) AT4G00670 46 / 1e-06 Remorin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017811 [exp] 196 / 1e-63 AT3G61260 199 / 5e-65 Remorin family protein (.1) Lus10014785 [exp] 125 / 3e-36 AT3G61260 177 / 1e-56 Remorin family protein (.1) Lus10030379 [exp] 122 / 4e-35 AT3G61260 178 / 4e-57 Remorin family protein (.1) Lus10039215 [exp] 107 / 3e-29 AT3G61260 196 / 7e-64 Remorin family protein (.1) Lus10027460 [exp] 107 / 4e-29 AT3G61260 192 / 2e-62 Remorin family protein (.1) Lus10001477 [exp] 87 / 5e-21 AT5G23750 162 / 3e-50 Remorin family protein (.1.2) Lus10008014 [exp] 82 / 6e-20 AT5G23750 158 / 5e-50 Remorin family protein (.1.2) Lus10008477 [exp] 83 / 2e-19 AT5G23750 154 / 5e-47 Remorin family protein (.1.2) Lus10024514 [exp] 49 / 2e-07 AT5G23750 113 / 5e-32 Remorin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G081300 [exp] 153 / 4e-47 AT3G61260 199 / 4e-65 Remorin family protein (.1) Potri.002G157700 [exp] 152 / 8e-47 AT3G61260 167 / 2e-52 Remorin family protein (.1) Potri.012G140800 [exp] 107 / 6e-29 AT5G23750 98 / 2e-25 Remorin family protein (.1.2) Potri.003G124400 [exp] 105 / 2e-28 AT5G23750 129 / 6e-38 Remorin family protein (.1.2) Potri.015G143600 [exp] 105 / 2e-28 AT5G23750 111 / 1e-30 Remorin family protein (.1.2) Potri.001G107000 [exp] 93 / 1e-23 AT5G23750 55 / 2e-09 Remorin family protein (.1.2) Potri.012G140900 [exp] 42 / 5e-05 AT3G48940 78 / 6e-19 Remorin family protein (.1) Potri.006G053200 [exp] 41 / 0.0002 AT3G57540 196 / 2e-61 Remorin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03766 [flax] [poplar] Remorin_N Remorin, N-terminal region PF03763 [flax] [poplar] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10018840 pacid=23144765 polypeptide=Lus10018840 locus=Lus10018840.g ID=Lus10018840.BGIv1.0 annot-version=v1.0 ATGGCGGAGCAAGAGACCACGAAGGTGGAAGCTGCAACGGCGCCGCCTGTTGCTGCTCCAGCTGTAGCTGCTGAAGCTCCGTCTCCGGCGCCGGCCTCTG TCGAGGAGAAGAGCATGGTTCCGGTGCCTGAAGAAAAGGCCGCAGAGAAACCAGAAGAGTCCAAAGCTCTGGCTCTCGTAGAAACAAAGGCACCTGAGGC TGCTCCAAAGAAGATATCAGGGGGATCCCATGACAGAGATGTTGCTCTTGCTGAGCTAGAGAAAGAGAAGAAGCTGTCCTTTGTCAGGGCATGGGAAGAC AGTGAGAAATCTAAAGTCACCAACAAGGCTGAGAAACAACTCTCTGATGTGGCTGCATGGGAGAACCACAAGAAGGCAGCTGTGGAAGCTAAACTTAAAA AGATTGAGGAGCAATTGGAGAAGAAAAAGGCACAATATGCAGAGCAAATGAAGAACAAAATAGCTCTAATCCACAAGCAAGCTGAAGAGAAAAGAGCAAT GGTGGAAGCCAAGCGGGGAGAAGAGCTTCTCAAAGCTGAAGAATTGGCTGCTAAATACCGTGCCACTGGCCAAACTCCCAAGAAGATGCTTGGTTGCTTC TGA
AA sequence Show only first row Show all	>Lus10018840 pacid=23144765 polypeptide=Lus10018840 locus=Lus10018840.g ID=Lus10018840.BGIv1.0 annot-version=v1.0 MAEQETTKVEAATAPPVAAPAVAAEAPSPAPASVEEKSMVPVPEEKAAEKPEESKALALVETKAPEAAPKKISGGSHDRDVALAELEKEKKLSFVRAWED SEKSKVTNKAEKQLSDVAAWENHKKAAVEAKLKKIEEQLEKKKAQYAEQMKNKIALIHKQAEEKRAMVEAKRGEELLKAEELAAKYRATGQTPKKMLGCF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61260			Remorin family protein (.1)		Lus10018840 [exp]	0	1
AT3G61260			Remorin family protein (.1)		Lus10017811 [exp]	1.0	0.9274
AT2G16850		PIP3B, PIP2;8	PLASMA MEMBRANE INTRINSIC PROT...		Lus10014978 [exp]	2.0	0.8706
AT3G49720			unknown protein		Lus10039648 [exp]	4.6	0.8432
AT4G33640			unknown protein		Lus10020463 [exp]	4.9	0.8327
AT5G40140			RING/U-box superfamily protein...		Lus10039447 [exp]	5.7	0.7966
AT3G13410			unknown protein		Lus10010298 [exp]	8.5	0.8093
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10022428 [exp]	9.5	0.8001
AT2G31680		AtRABA5d	RAB GTPase homolog A5D (.1)		Lus10025516 [exp]	11.7	0.8010
AT3G05520			Subunits of heterodimeric acti...		Lus10029890 [exp]	12.0	0.8155
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10009361 [exp]	13.0	0.7545

Compare expression of checked genes

Lus10018840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.