Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45880 804 / 0 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1) AT4G00490 615 / 0 BAM2, BMY9 BETA-AMYLASE 9, beta-amylase 2 (.1) AT5G45300 529 / 1e-179 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2) AT2G32290 371 / 7e-120 BAM6, BMY5 BETA-AMYLASE 5, beta-amylase 6 (.1) AT4G15210 363 / 1e-117 BAM5, AT-BETA-AMY, BMY1, RAM1, ATBETA-AMY REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) AT4G17090 347 / 6e-111 CT-BMY, BMY8, BAM3 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) AT3G23920 322 / 7e-101 BAM1, BMY7, TR-BAMY BETA-AMYLASE 7, beta-amylase 1 (.1) AT5G55700 248 / 2e-73 BAM4, BMY6 BETA-AMYLASE 6, beta-amylase 4 (.1.2) AT5G18670 205 / 1e-57 BAM9, BMY3 BETA-AMYLASE 9, beta-amylase 3 (.1) AT1G19350 58 / 1e-08 BZR BZR2, BES1 BRASSINAZOLE-RESISTANT 2, BRI1-EMS-SUPPRESSOR 1, Brassinosteroid signalling positive regulator (BZR1) family protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037846 [exp] 585 / 0 AT4G00490 684 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Lus10017820 [exp] 562 / 0 AT2G45880 551 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Lus10030392 [exp] 535 / 0 AT4G00490 660 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Lus10035679 [exp] 523 / 2e-176 AT5G45300 884 / 0.0 BETA-AMYLASE 8, beta-amylase 2 (.1.2) Lus10039701 [exp] 362 / 2e-115 AT4G15210 724 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10018491 [exp] 351 / 5e-112 AT4G15210 697 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10039702 [exp] 343 / 6e-110 AT4G15210 694 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10011035 [exp] 338 / 2e-107 AT4G17090 778 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10001087 [exp] 333 / 1e-105 AT4G17090 781 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G159300 [exp] 880 / 0 AT2G45880 858 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.014G083700 [exp] 880 / 0 AT2G45880 863 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.014G083800 [exp] 646 / 0 AT4G00490 799 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Potri.003G106500 [exp] 550 / 0 AT5G45300 831 / 0.0 BETA-AMYLASE 8, beta-amylase 2 (.1.2) Potri.017G040800 [exp] 353 / 6e-113 AT4G15210 764 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Potri.001G148900 [exp] 343 / 2e-109 AT4G17090 885 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.003G085500 [exp] 332 / 3e-105 AT4G17090 868 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.010G062900 [exp] 324 / 1e-101 AT3G23920 908 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.008G174100 [exp] 315 / 4e-98 AT3G23920 876 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.003G143500 [exp] 248 / 4e-73 AT3G23920 442 / 4e-149 BETA-AMYLASE 7, beta-amylase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05687 [flax] [poplar] BES1_N BES1/BZR1 plant transcription factor, N-terminal CL0058 [flax] [poplar] Glyco_hydro_tim PF01373 [flax] [poplar] Glyco_hydro_14 Glycosyl hydrolase family 14
Representative CDS sequence Show only first row Show all	>Lus10018842 pacid=23144745 polypeptide=Lus10018842 locus=Lus10018842.g ID=Lus10018842.BGIv1.0 annot-version=v1.0 ATGGCAACGGATATGCAAAGGCTGGTAGTAACTAGTGAAGAGGATGATGAAGAAGAAGAAATAGACATGGATGTCAAAGAGGAAGACAACAGGGGAAAGC ATATTGATGCTCAACTGATGGCTGGGATCGATGGAGGGATGCTGTCTGACAGTTGTGACAGCCAGTTTCAGTATCATCAGCAGCTTCAAGAACAAGCTAG CACCCCAGGAGGAGGGAACGGAGGTCGAAGGTGTAGGCCAGTTGAAGAGAAAGAGAGGACCAAGCTTAGAGAGCGGCATCGAAGGGCAATCACTGCCAGG ATCCTAGCGGGGTTAAGAAGGCATGGAAACTATAATCTTAGGGTTAGAGCAGATATCAATGATGTAATTGCTGCTTTGGCAAGGGAAGCTGGATGGGTCG TCCTCCCAGATGGGACCACCTTTCCTTCAAAATCTCAGGGTTCAAGGTCTGTCGGAGGTCCTTCTGCAACAGCTACACAGACTACTTCCCTTCAAACCCC GCAACAAGCACCTTCTGCTTCCCTCAGAGGAATTTCCACTGGTTACCAAACCTCGATGGACTATGATTCGGGTCAGCTGAAAAGTGTATTTGTGCCCACT CCACCACCTTATGATTTGTCTGCAGGGAATGTGGGAGATGTAGACCAAGCACGGATTATTCCTCTTGTTGTAGGTCCTGAGGTTACTATCGATGATAAGC AGATCCCTGATGTACAGGCAAACCTGTCGGAGCGTGAGTTTGCTGGTTCTGCATATGTACCAGTTTATGTGATGCTGCCACTGGGTGTAATAAATATGAA ATGTGAGCTGGCTGATCCAGATGGTCTATTACAGCAGCTGAGAGCACTAAAATCAGCTGATGTTGATGGTGTCAAGATTGACTGCTGGTGGGGAATAGTT GAGGCTCATGCTCCACAAGAGTATAATTGGCATGGTTACAAGAAGCTTTGTCAGATACTGCGTGAACTTAGGCTTAAGTTACAGAGGTCAGAGGTTGGCG ATAGATTGTTGGGTAGTCTGACTAGTCTGCTGAGGGTTGGGATGCCATTCCAAGGGTCATACAGTGGTGAAGAAAGACCAGAAAGCGAATGGAGACAGGG TCAAGCAGTAGGCATGGGAGAGGCTGTAGTCATAATGTCATTTCATGAATGTGGAGGCAATGTTGGCGATGATGTTTGTATTCCGTTGCCACATTGGATA GCAGAAATCGGTCGGAGTAATCCTGACATATTTTTCACTGATAAAGAAGGAAGGCGTAACCCAGAATGTCTCTCTTGGGGAATTGACAGGGAACGGGTTC TAAGAGGCCGGACTGCTGTTGAGGTATACTTTGATTACATGAGAAGTTTCCGGGTAGAGTTTGATGAATTCTTCGAAGATGGTATCATCTCCTTGGTTGA AATTGGCCTTGGGCCCTGTGGCGAGCTTCGGTACCCTTCTAATCCTGTAAAGCATGGTTGGAGATATCCTGGGATTGGTGAATTTCAGTGTTATGATCAA TATATGATGCAAAATCTGAGGAAGGCAGCAGAAGCAAGGGGACACCCATTTTGGGCTAGGGGACCCGATAATTCTGGTTCCTATAACTCGCGGCCACATG AAACAGGTTTTTTCTGTGATGGAGGAGACTATGATGGCTATCATGGGAGGTTCTTCCTGAATTGGTATTCCAGGGTTTTAGTTGATCATGGTGATCTAGT GCTTTCTTTGGCCAAATTGGCTTTTGAAGGTACCTGCATTACTGCAAAGCTACCAAGTATCCATTGGTGGTACAAGACAGCTAGCCATGCTGCAGAGTTA ACAGCTGGAATCTACAACTCATGCAACCGCGACGGCTATGCTGCAATCACAGCAATGCTGAAGAAACACGGGATTGCCTTGAATTTCTGTTTCTCCGATT TCGGGATGCTAAACCAACCTGTCGATTTTGCTGAGGGATGTGCAGATCGTGATGGATTATTTTGGCAAGTGTTGAATGCTGCTTGGGACGTCTCTATACA GATTGGCAGCGAGAGTTCATTTCTTTCTCATGATAGACTTGCCTATAACAAGATATTGGATAATGTGAAGCCATTGAACGATCCAGACGGAAGACATTCT CTTTCATTTACATACCAGAGATTGAGCGTAGCTCTAATGGATAGACACAACTTGCTCGAATTCGAAAGTTTCGTCAAAAGAATGCATGGTAAGCCGCCTG CCTATGCCTAG
AA sequence Show only first row Show all	>Lus10018842 pacid=23144745 polypeptide=Lus10018842 locus=Lus10018842.g ID=Lus10018842.BGIv1.0 annot-version=v1.0 MATDMQRLVVTSEEDDEEEEIDMDVKEEDNRGKHIDAQLMAGIDGGMLSDSCDSQFQYHQQLQEQASTPGGGNGGRRCRPVEEKERTKLRERHRRAITAR ILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSKSQGSRSVGGPSATATQTTSLQTPQQAPSASLRGISTGYQTSMDYDSGQLKSVFVPT PPPYDLSAGNVGDVDQARIIPLVVGPEVTIDDKQIPDVQANLSEREFAGSAYVPVYVMLPLGVINMKCELADPDGLLQQLRALKSADVDGVKIDCWWGIV EAHAPQEYNWHGYKKLCQILRELRLKLQRSEVGDRLLGSLTSLLRVGMPFQGSYSGEERPESEWRQGQAVGMGEAVVIMSFHECGGNVGDDVCIPLPHWI AEIGRSNPDIFFTDKEGRRNPECLSWGIDRERVLRGRTAVEVYFDYMRSFRVEFDEFFEDGIISLVEIGLGPCGELRYPSNPVKHGWRYPGIGEFQCYDQ YMMQNLRKAAEARGHPFWARGPDNSGSYNSRPHETGFFCDGGDYDGYHGRFFLNWYSRVLVDHGDLVLSLAKLAFEGTCITAKLPSIHWWYKTASHAAEL TAGIYNSCNRDGYAAITAMLKKHGIALNFCFSDFGMLNQPVDFAEGCADRDGLFWQVLNAAWDVSIQIGSESSFLSHDRLAYNKILDNVKPLNDPDGRHS LSFTYQRLSVALMDRHNLLEFESFVKRMHGKPPAYA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Lus10018842 [exp]	0	1
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10016761 [exp]	25.0	0.7242
AT2G06000			Pentatricopeptide repeat (PPR)...		Lus10004615 [exp]	27.0	0.7247
AT1G52620			Pentatricopeptide repeat (PPR)...		Lus10026791 [exp]	27.3	0.6728
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Lus10009708 [exp]	38.7	0.7118
AT4G02220			zinc finger (MYND type) family...		Lus10029718 [exp]	42.8	0.6680
AT1G55630			Pentatricopeptide repeat (PPR)...		Lus10027465 [exp]	69.3	0.6439
AT2G18850			SET domain-containing protein ...		Lus10025463 [exp]	92.6	0.6128
AT1G77470		EMB2810, RFC5, ...	replication factor C 5, EMBRYO...		Lus10025689 [exp]	117.8	0.6666
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10014244 [exp]	131.2	0.6496
AT4G20350			oxidoreductases (.1.2)		Lus10028991 [exp]	137.7	0.6559

Compare expression of checked genes

Lus10018842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.