Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00620 486 / 5e-174 EMB3127 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) AT2G38660 411 / 7e-145 Amino acid dehydrogenase family protein (.1.2.3.4) AT3G12290 392 / 4e-138 Amino acid dehydrogenase family protein (.1) AT4G00600 382 / 1e-133 Amino acid dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017822 [exp] 586 / 0 AT4G00620 488 / 4e-175 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10011368 [exp] 511 / 0 AT4G00620 523 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10006425 [exp] 509 / 0 AT4G00620 529 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10022670 [exp] 509 / 6e-180 AT4G00620 527 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10012502 [exp] 417 / 2e-143 AT4G00620 442 / 6e-152 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10034187 [exp] 403 / 2e-141 AT2G38660 473 / 5e-168 Amino acid dehydrogenase family protein (.1.2.3.4) Lus10043398 [exp] 400 / 4e-140 AT2G38660 469 / 2e-166 Amino acid dehydrogenase family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G157100 [exp] 497 / 2e-178 AT4G00620 545 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Potri.006G114100 [exp] 417 / 4e-147 AT2G38660 456 / 2e-161 Amino acid dehydrogenase family protein (.1.2.3.4) Potri.011G098600 [exp] 382 / 6e-134 AT3G12290 473 / 3e-170 Amino acid dehydrogenase family protein (.1) Potri.014G080701 [exp] 101 / 3e-27 AT4G00620 101 / 1e-27 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0603 [flax] [poplar] AA_dh_N PF00763 [flax] [poplar] THF_DHG_CYH Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CL0063 [flax] [poplar] NADP_Rossmann PF02882 [flax] [poplar] THF_DHG_CYH_C Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
Representative CDS sequence Show only first row Show all	>Lus10018843 pacid=23144702 polypeptide=Lus10018843 locus=Lus10018843.g ID=Lus10018843.BGIv1.0 annot-version=v1.0 ATGAATCATGCAGCATCTAGCGATGCGGATACCTCGTCCGCTAAGGTGATCGATGGGAAACAGGTGGCCCAAGAAATCAGAGAGGAGATAACTGCTCAAG TATCGAGAATGAAGGATGCGATTGGTGTTGTTCCCGGATTAGCAGTCATACTTGTTGGTGACAGGAAGGATTCCGCCACTTACGTTCGAAACAAGCAGAA AGCTTGCGAATCTGCCGGGATTAACTCTTATCAAGTGGGTCTCCCAGAAGATGCAGCTGAAGCTGAGATTCTCAAGCATATCAAGGACTTCAATGATAAT CCTGCAGTTCATGGCATTCTTGTCCAATTGCCTTTACCAAAGCGTATGAACGAACATACAGTGTTGAATGCTGTTAGTATGGAGAAAGATGTAGATGGTT TCCACCCTTTGAACATTGGGCGTCTTGCTATGCGAGGAAGAGAACCCTTGTTTGTTCCTTGTACACCAAAGGGGTGCATTGAGTTGTTGCGTAGGTCTGG GATTCAGATCAGTGGCAAGAAAGCAGTTGTTATCGGGAGGAGTAATATCGTTGGTACACCAGCTGCTTTGTTGCTTCAGAGGGAGGATGCTACTGTAACT GTCGTGCACTCGAGGACTAAGGATCCGCAAGAGATTGTGAAACAAGCAGATATTGTGGTCTCTGCTGTAGGCCAAGCTAACATGGTGAGAGGAAGTTGGC TAAAGCCTGGTGCTGTTGTCATTGATGTTGGCATCAACGCAGTTGAGGATTCAACGTGCCCTCGAGGTTACAGATTGGTCGGGGATGTTTGCTATGAGGA GGCCATCAAAGTAGCTTCAGCAATAACTCCAGTTCCCGGGGGAGTTGGTCCTATGACCATAGCAATGCTTCTTTCCAATACTCTCTCCTCAGCAAAACGG ATACACAACTTTCAGTGA
AA sequence Show only first row Show all	>Lus10018843 pacid=23144702 polypeptide=Lus10018843 locus=Lus10018843.g ID=Lus10018843.BGIv1.0 annot-version=v1.0 MNHAASSDADTSSAKVIDGKQVAQEIREEITAQVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKQKACESAGINSYQVGLPEDAAEAEILKHIKDFNDN PAVHGILVQLPLPKRMNEHTVLNAVSMEKDVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLRRSGIQISGKKAVVIGRSNIVGTPAALLLQREDATVT VVHSRTKDPQEIVKQADIVVSAVGQANMVRGSWLKPGAVVIDVGINAVEDSTCPRGYRLVGDVCYEEAIKVASAITPVPGGVGPMTIAMLLSNTLSSAKR IHNFQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10018843 [exp]	0	1
AT4G27130			Translation initiation factor ...		Lus10015124 [exp]	1.0	0.9537
AT2G26070		RTE1	REVERSION-TO-ETHYLENE SENSITIV...		Lus10030001 [exp]	2.2	0.9458
AT3G03610			ELMO/CED-12 family protein (.1...		Lus10009523 [exp]	2.4	0.9509
AT1G26670		VTI1B, ATVTI12,...	VESICAL TRANSPORT V-SNARE 12, ...		Lus10036788 [exp]	4.2	0.9384
AT4G27130			Translation initiation factor ...		Lus10027181 [exp]	4.9	0.9486
AT2G10950			BSD domain-containing protein ...		Lus10027706 [exp]	7.2	0.9466
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10011924 [exp]	7.3	0.9220
AT4G33690			unknown protein		Lus10040497 [exp]	8.4	0.9332
AT3G14830			unknown protein		Lus10041938 [exp]	9.4	0.9375
AT5G53220			unknown protein		Lus10001067 [exp]	9.8	0.9280

Compare expression of checked genes

Lus10018843 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.