Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00630 1152 / 0 ATKEA2, KEA2 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) AT1G01790 1141 / 0 ATKEA1, KEA1 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) AT4G04850 186 / 1e-48 ATKEA3, KEA3 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) AT5G51710 64 / 4e-10 ATKEA5, KEA5 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) AT2G19600 55 / 4e-07 ATKEA4 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) AT5G11800 54 / 4e-07 ATKEA6, KEA6 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017823 [exp] 1096 / 0 AT1G01790 660 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Lus10009830 [exp] 942 / 0 AT4G00630 838 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10040938 [exp] 608 / 0 AT4G00630 928 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10009829 [exp] 362 / 9e-117 AT4G00630 372 / 3e-121 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10007104 [exp] 184 / 3e-48 AT4G04850 936 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10020485 [exp] 134 / 1e-32 AT4G04850 704 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10020484 [exp] 69 / 3e-12 AT4G04850 286 / 1e-91 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10008002 [exp] 64 / 8e-10 AT2G19600 781 / 0.0 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) Lus10040549 [exp] 63 / 1e-09 AT2G19600 851 / 0.0 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G080800 [exp] 1309 / 0 AT1G01790 1300 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Potri.002G157200 [exp] 1309 / 0 AT1G01790 1343 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Potri.009G080800 [exp] 182 / 6e-47 AT4G04850 841 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Potri.012G130500 [exp] 70 / 7e-12 AT5G51710 830 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Potri.015G132400 [exp] 70 / 8e-12 AT5G51710 791 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Potri.006G230400 [exp] 52 / 2e-06 AT5G11800 731 / 0.0 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1) Potri.018G054100 [exp] 52 / 3e-06 AT5G11800 740 / 0.0 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02254 [flax] [poplar] TrkA_N TrkA-N domain CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10018844 pacid=23144630 polypeptide=Lus10018844 locus=Lus10018844.g ID=Lus10018844.BGIv1.0 annot-version=v1.0 ATGGTCGTTCCTGTGGATTTCTCGTCTGGTGTGTGCCCGTCTAATTCGTTCCACGGCTGTGAAGGCACGAGTTATAGGGTGTTTAGTAAGCTGAATTCGA GGCTTGGATATAAACGTTTCAATTCGGACTCTATTAATTGGAAGGATAGATCATCCAAGAGGATTAATAAAAAGGCATTTCTTTCTAGTAGCCGGTTAAA TTCGAGTCTGGTTCCCAATGGAGGGCTTCCTAGTGGTTGGTGGAATGGCTACTCCGATCATTCCTTGTTTTCGGCCTCTCGTGTTGCTTTTAGGCTATCG ACCAGGAGGAATTGCCAGGGTAATGATTCTCTAGCATATGACAATGGGAATGGTCGAAACGCAGACTTGGTGGAAGATAGCGGTGGGAGTTCGAAAACTG AGTCTACTGACTCTGTCATGGAAGCTGGAGAAGAAAAAGAAGTGGACACTCTCAGCTTGGATGAACTAAGGGAATTGTTGCAGAAGGCTATGAAAGAGTT GGAAGTTGCACGACTAAATAGTACTATGTTTGAGGAGAAGGCGCAGCAAATTTCTGAAGCTGCAATAGCTTTGAAGGATGATGCGTCAAGTGCTTGGAGC GATGTTAATGCTGCCCTGGATCTGATTCAACAGATTGTAAATGAGGAGTCTGTTGCCAAAGAAGCTGCTCAGAAAGCCACCATGTCCCTCTCGTTGGCTG AGGCTAGGCTGAAGGTGGCAACAGAATCATTAGAAACTTCATCAGAAGAAACTGTTCCTCTAGAGGAATCTGCAGCGAGTGACATTGAAACCAATGAACA TGACCAAGTAATTTTAGCTGCACATAAAGATATCAAGGAATGTCAGGAAAATTTGCTGAATTGTGAGGCTGACCTGAAACGATTGCAAAATAAGAAAGAA GAGTTGCAGCAAGAGGTAGATAGATTGAAGGGTGTCGCTGACCGAACACAGATGGATGCACTGAAAGCAGAAGAAGAGGTTGGCAACATTATGCTTTTAG CTGAGCAAGCTGTAGCATTTGAAATTGAGGCCACCAAACGTGTGAGCGATGCTGAAATCGCATTACACAGAGCAGAGAAGTCCCTCTCTGGGTCTAATGT TGATACATCCGAAACAACACAGGGACCTATGTCTGGTGATGTGGCTGTTATTGAGGAGGGGATGGTGGATGAAGGAGCCAATGTTGATTCTGTAAAAGAA ATTGATTTGCTAACCGATGGGGATGTTTTCATTGTTGAGCCTGCCCTCAGTTCTAAGGACATGCCTCAACCTGATGATATTTGTGATCAAGAAAATGGAC ATGCGACTCTTGAACGTCCTAAAGACTCTGAACTCGAAGTGGAAAAATCAAAGAAGGGAGCTCAAGTTAGAAAACAGGATCCGCAAAAGGAAGCTATGAG AGAGAGCTCACCATCACCTTTCAATGCTCAAAAGGCATCATTGAACAAATCTTCTCGTTTCTTCCCTGCATCATTCTTCTCATTCACTGTAGATGGGACA GAATTGACACCGACATCAGTTTTCCAAAGTTTCATGAACTCTGCAAAGCACCAATTACCTAAGCTTGTCGTTGGCCTGCTACTGATTGGAGGAGGGGTCG CATTCTACACAAATCGCTTGGATAGAAGTTCTCAGATGCTTCAGCAGCCTGAGATTGTCACCTCCAGTGTTGAAGAAGTTTCCTCCAATGTGAAGCCCGT GACTGTTCAAATAAAGAAGTTCTCAAAGAAAGTGAAACAGCTACTTGCAAAGCTTCCGCATCAAGAGGCATGCAGTCCTGTCCTTGGGTACTTGGCTGCT GGCATTTTGATTGGTCCTTATGGCTTGTCTATCATTCGTCATGTGCACGGGACAAAGGCAATTGCTGAATTTGGAGTTGTTTTTCTGCTGTTCAATATTG GGTTAGAGCTTTCAGTTGAAAGACTCAGTTCGATGAAGAAATATGTCTTTGGCTTAGGCTCAGCTCAGGTCTTGGTGACAGCAGTTGTTGCTGGTTTGGC CGCTCACTTTTTTGCCGGGGTCCCTGGTCCGGCTGCAATTGTAATTGGCAATGGCCTAGCATTATCGTCAACTGCTGTTGTTCTGCAGGATCTGGCCGTT GTGGTGTTGCTAATACTTATACCACTCATTTCACCGAATTCATCAAAAGGAGGGGTTGGGTTCCAGGCAATAGCTGAAGCCCTTGGACTTGCTGCTGTTA AAGCTGCTGTTGCTATCACTGCTATTATTGCCGGTGGCCGATTGCTGCTTCGACCAATATATAAGCAGATTGCTGAAAATCAGAATGCAGAGATATTCTC TGCCAATACCCTGCTTGTTATTCTTGGGACTAGTCTCCTCACTGCCAGGGCGGGACTCTCTATGGCACTGGGAGCATTTCTTGCTGGTTTGCTCCTGGCC GAAACTGAATTTTCGTTGCAAGTTGAATCTGATATTGCTCCGTACCGAGGTCTTCTTCTAGGCCTTTTTTTCATGACAGTTGGGATGTCAATCGACCCGA AACTGCTTTTTTCGAACTTCCCAGTCATTATGGGGACACTGGGACTTCTAATAGTAGGGAAGACACTTTTGGTTGCTTTAGTTGGCAGGCTTTTTGGTGT TTCCCTTATTTCTGCCATAAGAGTTGGCCTCCTTCTTGCTCCTGGGGGTGAATTCGCGTTTGTTGCTTTTGGTGAAGCTGTCAATCAGAGTATAATGTCT CCCCAGCTTTCATCATTGTTGTTTCTTGTTGTGGGAATTTCTATGGCCATCACACCATGGCTAGCAGCTGGCGGTCAGCTAATTGCCTCCCGTTTTGAGC TTCATGATGTTCGAAGTCTATTGCCAGTTGAAAGTGAGACAGATGACTTACAGGGTCACATTATCATCTGCGGATTCGGGCGCGTTGGGCAGATTATTGC ACAACTTCTTTCAGAACGGTTGATTCCATTTGTGGCTCTCGACGTCAGGAGTCGGTCTACCTTTCTCAGTGACAGGGTGGCAGTCGGGCGCGCCTTGGAC CTTCCGGTGTATTTTGGAGATGCCGGTAGCCGAGAGGTTCTCCATAAAGTTGGAGCTGAAAGAGCATGTGCTGCTGCAATAACATTGGATTCACCTGGTG CAAATTATAGAACAGTTTGGGCTCTCAGCAAGCATTTCCCCAACGTGAAGACTTTTGTCAGGGCGCACGATGTAGACCATGGCCTCAATTTGGAAAAAGC TGGAGCCTCTGCTGTTGTCCCTGAGACTCTGGAACCAAGTCTGCAGTTGGCTGCTGCTGTTCTTGCACAGGCTAAACTCCCAACCTCCGAGATCGCTGCA ACGATCAATGAATTCAGGTCCCGTCATTTGTCCGAACTCACAGAGCTATGTGAAGCCAGCGGAAGTTCTCTTGGTTATGGATTTTCACGGGTCATGAGTA AGCCAAAAAATACCCTATCTGATGATGACAACCAAATCACAGAAGGAACCCTAGCCATATGA
AA sequence Show only first row Show all	>Lus10018844 pacid=23144630 polypeptide=Lus10018844 locus=Lus10018844.g ID=Lus10018844.BGIv1.0 annot-version=v1.0 MVVPVDFSSGVCPSNSFHGCEGTSYRVFSKLNSRLGYKRFNSDSINWKDRSSKRINKKAFLSSSRLNSSLVPNGGLPSGWWNGYSDHSLFSASRVAFRLS TRRNCQGNDSLAYDNGNGRNADLVEDSGGSSKTESTDSVMEAGEEKEVDTLSLDELRELLQKAMKELEVARLNSTMFEEKAQQISEAAIALKDDASSAWS DVNAALDLIQQIVNEESVAKEAAQKATMSLSLAEARLKVATESLETSSEETVPLEESAASDIETNEHDQVILAAHKDIKECQENLLNCEADLKRLQNKKE ELQQEVDRLKGVADRTQMDALKAEEEVGNIMLLAEQAVAFEIEATKRVSDAEIALHRAEKSLSGSNVDTSETTQGPMSGDVAVIEEGMVDEGANVDSVKE IDLLTDGDVFIVEPALSSKDMPQPDDICDQENGHATLERPKDSELEVEKSKKGAQVRKQDPQKEAMRESSPSPFNAQKASLNKSSRFFPASFFSFTVDGT ELTPTSVFQSFMNSAKHQLPKLVVGLLLIGGGVAFYTNRLDRSSQMLQQPEIVTSSVEEVSSNVKPVTVQIKKFSKKVKQLLAKLPHQEACSPVLGYLAA GILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVAGLAAHFFAGVPGPAAIVIGNGLALSSTAVVLQDLAV VVLLILIPLISPNSSKGGVGFQAIAEALGLAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLA ETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLFSNFPVIMGTLGLLIVGKTLLVALVGRLFGVSLISAIRVGLLLAPGGEFAFVAFGEAVNQSIMS PQLSSLLFLVVGISMAITPWLAAGGQLIASRFELHDVRSLLPVESETDDLQGHIIICGFGRVGQIIAQLLSERLIPFVALDVRSRSTFLSDRVAVGRALD LPVYFGDAGSREVLHKVGAERACAAAITLDSPGANYRTVWALSKHFPNVKTFVRAHDVDHGLNLEKAGASAVVPETLEPSLQLAAAVLAQAKLPTSEIAA TINEFRSRHLSELTELCEASGSSLGYGFSRVMSKPKNTLSDDDNQITEGTLAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00630		ATKEA2, KEA2	K+ efflux antiporter 2, K+ eff...		Lus10018844 [exp]	0	1
AT1G01790		ATKEA1, KEA1	K+ efflux antiporter 1, K+ EFF...		Lus10017823 [exp]	1.0	0.9454
AT1G74960		ATKAS2, KAS2, F...	ARABIDOPSIS BETA-KETOACYL-ACP ...		Lus10033422 [exp]	2.4	0.8391
AT4G33480			unknown protein		Lus10003851 [exp]	7.1	0.7993
AT5G57160		ATLIG4	DNA ligase IV (.1)		Lus10020013 [exp]	9.0	0.7821
AT3G20320		ABCI15, TGD2	ATP-binding cassette I15, trig...		Lus10007420 [exp]	10.2	0.7946
AT1G24490		ALB4, ARTEMIS	ARABIDOPSIS THALIANA ENVELOPE ...		Lus10011398 [exp]	12.1	0.7505
AT3G15160			unknown protein		Lus10040027 [exp]	13.7	0.8127
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Lus10016830 [exp]	16.1	0.8056
AT1G77300		ASHH2, CCR1, SD...	LAZARUS 2, CAROTENOID CHLOROPL...		Lus10000967 [exp]	19.4	0.8305
AT5G16280			Tetratricopeptide repeat (TPR)...		Lus10013588 [exp]	21.4	0.8097

Compare expression of checked genes

Lus10018844 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.