Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76650 98 / 1e-23 CML38 calmodulin-like 38 (.1.2.3) AT3G01830 94 / 2e-22 Calcium-binding EF-hand family protein (.1.2) AT1G76640 94 / 3e-22 Calcium-binding EF-hand family protein (.1) AT3G12340 99 / 1e-21 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G50770 79 / 1e-16 CML41 calmodulin-like 41 (.1) AT1G66400 75 / 1e-15 CML23 calmodulin like 23 (.1) AT4G25340 79 / 2e-15 ATFKBP53 FK506 BINDING PROTEIN 53 (.1.2) AT5G37770 74 / 2e-15 CML24, TCH2 TOUCH 2, CALMODULIN-LIKE 24, EF hand calcium-binding protein family (.1) AT5G42380 71 / 4e-14 CML39, CML37 CALMODULIN LIKE 39, calmodulin like 37 (.1) AT3G07490 65 / 4e-12 AtCML3, AGD11 calmodulin-like 3, ARF-GAP domain 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011649 [exp] 502 / 1e-174 AT3G12340 92 / 7e-20 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10022343 [exp] 102 / 4e-25 AT1G76650 132 / 7e-40 calmodulin-like 38 (.1.2.3) Lus10032734 [exp] 89 / 5e-20 AT3G50770 153 / 5e-47 calmodulin-like 41 (.1) Lus10000972 [exp] 71 / 5e-14 AT1G21550 128 / 3e-38 Calcium-binding EF-hand family protein (.1) Lus10031121 [exp] 74 / 1e-13 AT4G25340 335 / 3e-110 FK506 BINDING PROTEIN 53 (.1.2) Lus10015029 [exp] 72 / 3e-13 AT4G25340 331 / 8e-110 FK506 BINDING PROTEIN 53 (.1.2) Lus10027701 [exp] 68 / 1e-12 AT2G43290 153 / 2e-46 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Lus10028913 [exp] 66 / 1e-12 AT1G24620 204 / 5e-68 EF hand calcium-binding protein family (.1) Lus10004330 [exp] 65 / 5e-12 AT1G24620 207 / 2e-69 EF hand calcium-binding protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G093800 [exp] 127 / 1e-34 AT1G76650 101 / 8e-28 calmodulin-like 38 (.1.2.3) Potri.002G132500 [exp] 122 / 1e-32 AT5G42380 98 / 1e-26 CALMODULIN LIKE 39, calmodulin like 37 (.1) Potri.001G332900 [exp] 110 / 3e-28 AT1G76650 115 / 2e-33 calmodulin-like 38 (.1.2.3) Potri.007G000500 [exp] 119 / 4e-28 AT3G12340 149 / 1e-38 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G259900 [exp] 92 / 5e-21 AT1G76650 156 / 2e-48 calmodulin-like 38 (.1.2.3) Potri.015G130900 [exp] 94 / 5e-20 AT4G25340 204 / 1e-59 FK506 BINDING PROTEIN 53 (.1.2) Potri.002G001400 [exp] 86 / 5e-19 AT5G42380 160 / 6e-50 CALMODULIN LIKE 39, calmodulin like 37 (.1) Potri.012G129200 [exp] 90 / 8e-19 AT4G25340 344 / 1e-113 FK506 BINDING PROTEIN 53 (.1.2) Potri.005G128100 [exp] 79 / 8e-17 AT3G50770 188 / 7e-61 calmodulin-like 41 (.1) Potri.017G029700 [exp] 74 / 7e-15 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [flax] [poplar] FKBP PF00254 [flax] [poplar] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10018845 pacid=23144713 polypeptide=Lus10018845 locus=Lus10018845.g ID=Lus10018845.BGIv1.0 annot-version=v1.0 ATGGCTTTCTGGGGTGCTGTGATTAAACCAGGACAACCACTCTACCATGCTCCTGGAGGTCCAAAACTCAGACTTACCCAGGCCACCTTGGATAACAGTA GCAATGGAAACTCTGTCAAATGTTCCATACAGTGTACTATAGATGGTAAGGCACCCGTGAACCTTTGCAATCTGATTCCCAACACTTGTGAAAGTTGCCA GATTCATGCCGAGTTTCAAGAACCTCAAAACGTCACTTTCTCTGTAATTGGTCCTATGGCCGTTCATTTGATTGGCTATTTTAAGCATTCTGGAGGAGAT AACAACGACTCGTATCCTTTTCTTCTTCTTATTTTGATGCATGCAATTCCTACCGTTTGTTTTTTAGTTTGTTTTTCCTTCACTCCGGCGATCTCTATTA CTATTAGTGTGAGTTACGGTGAGGATATCTGCCAATCCGAGTCAGAAGCGTCCCTTCATTCTAGTGAGGATGAAGAAGCAGCCAATGACAGCTTTATAAA TGACGGCGATCCTGAAGAAGATATCGATTCTGAACTTGATTCAGTTGATGAGACAATCAAAAGGCGTTCGAAAAGAAAAAAGGCTAACCAAAAACGATTG AGGAAGACATACGTGTCCGAGTCTGATTCTGATCATCAAGATTCTGGTGCTGATGCTACCCCACTGATTGACTTGGAAGTTGAAGATAAGGATGTCAAGT TACAATTGGCCAAAGATAAGAAAGATGTCGTTGCTGATAGTAGTATTGAAAGGCAATCTGATAACTTGGATAAGGAAACAGTACTTGATAATAATGGAAA GCATACAAAATTGGCTGAAGAAGATGATGATGGTTTTTTCTTTTCTGGATCTTTGCTCACATTTCCCAAACCTCTTGAAAATAGGACCCGCAGTGAGGTT AAAAATAAGAGATATAGCAAAGTGCAAACCAAAGGGAATGCACTTGAGGAAAAGCGTGACAATGATGCTTTGGTAGGAGATGGGGAACAAGTGTCTCTTA AGAGCAAGAGCAATAAGCGTAAGAGAAAATCTAAAACTGAAGAAACTATCAATGTTGAGCAGCTCGAAGTAGGACTGCAAAAGGGGAAAGTGGCTTCTTT GGGGAAAAAGGTAAAAGTGTCTTATACTGGAAAATGGAAGGCTAGTGGGAAAGTATTTGACTCAAATGTTGATGACTGTCCATTAAGCTTTAAGCTGGGC AATGAAGGGGTGATGGAGGAATGGAATATTGCTCTGAATGATAATTTTCGAAGTGTAGGTAGGCAGTCAGGCGATAGTGTAAGACTCACAATCCCTCATC CAGTATGGAAGAGAGCCATTCTTACCCACACCGCCACTCAATTCTTTCTGCTCCGACTCGTCACCTGCATCATGGTAAATGTACGGATGAACAACGCCCC TGCATCTCTGGATTTCGAGCGGGTCTTCCGGCATCTTGATAGGAACGGCGGGGGCAAAATATCCCCGTCGGAGCTGAACCACCACCTAGGTCTTGGTTTG ACCCAAGAGGAAGAGGAGTTATGTCTGTTATCCGTAAGACGCGCCGCCTCAGACGATGGAATGATGGGTATGGATGATTTGGTTCATTTAATAGAAGCGG GGGACGAGGAGGACAAGCTTCGAGATTTGAAGGAGGCTTTCCGGATGTACGATGGTGGAAATTGTGGGTTTATTACACCAGAAAGCTTGCGAGCGATGCT AATTAGGCTTGGGGAGTCCAAGTCCACTCAAGATTGCCAGGCTATGATCAGTAGATTTGATTTAGACGGTGACGGCGTCCTCAGCTTTGATGAGTTCAGG GCTATGATGCTCTGA
AA sequence Show only first row Show all	>Lus10018845 pacid=23144713 polypeptide=Lus10018845 locus=Lus10018845.g ID=Lus10018845.BGIv1.0 annot-version=v1.0 MAFWGAVIKPGQPLYHAPGGPKLRLTQATLDNSSNGNSVKCSIQCTIDGKAPVNLCNLIPNTCESCQIHAEFQEPQNVTFSVIGPMAVHLIGYFKHSGGD NNDSYPFLLLILMHAIPTVCFLVCFSFTPAISITISVSYGEDICQSESEASLHSSEDEEAANDSFINDGDPEEDIDSELDSVDETIKRRSKRKKANQKRL RKTYVSESDSDHQDSGADATPLIDLEVEDKDVKLQLAKDKKDVVADSSIERQSDNLDKETVLDNNGKHTKLAEEDDDGFFFSGSLLTFPKPLENRTRSEV KNKRYSKVQTKGNALEEKRDNDALVGDGEQVSLKSKSNKRKRKSKTEETINVEQLEVGLQKGKVASLGKKVKVSYTGKWKASGKVFDSNVDDCPLSFKLG NEGVMEEWNIALNDNFRSVGRQSGDSVRLTIPHPVWKRAILTHTATQFFLLRLVTCIMVNVRMNNAPASLDFERVFRHLDRNGGGKISPSELNHHLGLGL TQEEEELCLLSVRRAASDDGMMGMDDLVHLIEAGDEEDKLRDLKEAFRMYDGGNCGFITPESLRAMLIRLGESKSTQDCQAMISRFDLDGDGVLSFDEFR AMML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12340			FKBP-like peptidyl-prolyl cis-...		Lus10018845 [exp]	0	1
AT2G11000		ATMAK10	MAK10 homologue (.1.2)		Lus10005185 [exp]	5.9	0.8538
AT5G57500			Galactosyltransferase family p...		Lus10000407 [exp]	8.7	0.8498
AT4G32295			unknown protein		Lus10001504 [exp]	16.9	0.7906
					Lus10029790 [exp]	22.1	0.8184
AT5G42670			Agenet domain-containing prote...		Lus10011444 [exp]	23.7	0.7668
AT1G11190		ENDO1, BFN1	ENDONUCLEASE 1, bifunctional n...		Lus10011232 [exp]	38.4	0.8111
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10037784 [exp]	45.7	0.8022
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10030496 [exp]	63.8	0.7968
AT5G59790			Domain of unknown function (DU...		Lus10040860 [exp]	99.7	0.7728
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Lus10029747 [exp]	114.1	0.7625

Compare expression of checked genes

Lus10018845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.