Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61200 127 / 2e-37 Thioesterase superfamily protein (.1) AT1G04290 62 / 2e-12 Thioesterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000809 [exp] 280 / 1e-96 AT3G61200 135 / 3e-39 Thioesterase superfamily protein (.1) Lus10019228 [exp] 68 / 1e-14 AT1G04290 228 / 1e-77 Thioesterase superfamily protein (.1) Lus10004288 [exp] 68 / 2e-14 AT1G04290 226 / 5e-77 Thioesterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G155500 [exp] 161 / 9e-51 AT3G61200 139 / 4e-42 Thioesterase superfamily protein (.1) Potri.014G078900 [exp] 156 / 8e-49 AT3G61200 160 / 2e-50 Thioesterase superfamily protein (.1) Potri.004G134066 [exp] 64 / 3e-13 AT1G04290 200 / 8e-67 Thioesterase superfamily protein (.1) Potri.004G134132 [exp] 59 / 3e-11 AT1G04290 166 / 2e-53 Thioesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [flax] [poplar] HotDog PF03061 [flax] [poplar] 4HBT Thioesterase superfamily
Representative CDS sequence Show only first row Show all	>Lus10018847 pacid=23144728 polypeptide=Lus10018847 locus=Lus10018847.g ID=Lus10018847.BGIv1.0 annot-version=v1.0 ATGTCCAATGACGGCAGCGGAGGAGCTGTCGGTGAGAGATCGACGGTGATCAGAGACGTCCCTGTCCAATACGCGAACACGGTTAAAAACTTCTTCAGAA GCACTGGAGTCTCCGATCCTTCGGTGAAAAAGTACACCTCCACCAAAGACTCCTACTCCGATATCATCACCGGCCTCCTAAAGGTCCACGCCGTCGAACG CGGCTGGGTCTCTTGCTCCTTCTCCGTCCTTCCCCTCGTCGCCAATTTTTACAAAGGTCTACACGGAGGAGCAGCGGCCGCAGTAGCGGAGAGGATATCT ATTGCGTGTGCTAGAACCCTAGTGGCGGAGGAGAAGGAGCTGTTTCTAGGTGAATTGGGGATCTCTTACCTATCAGCTGCCCCTGAAAATGAGACGCTCA CGGTTGAGGCTAATGTGGTAAGGAGCGGGAGGAACTTGACGGTGGTTTCAATGGAGTTCCGGCAGAGTAAAACCGGGAAGCTAATGTATACTGCTCGCTC TACCTTCTATCACCTCACTGCTTCCAAGCTATAG
AA sequence Show only first row Show all	>Lus10018847 pacid=23144728 polypeptide=Lus10018847 locus=Lus10018847.g ID=Lus10018847.BGIv1.0 annot-version=v1.0 MSNDGSGGAVGERSTVIRDVPVQYANTVKNFFRSTGVSDPSVKKYTSTKDSYSDIITGLLKVHAVERGWVSCSFSVLPLVANFYKGLHGGAAAAVAERIS IACARTLVAEEKELFLGELGISYLSAAPENETLTVEANVVRSGRNLTVVSMEFRQSKTGKLMYTARSTFYHLTASKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61200			Thioesterase superfamily prote...		Lus10018847 [exp]	0	1
AT1G68300			Adenine nucleotide alpha hydro...		Lus10041436 [exp]	9.0	0.9204
AT4G27130			Translation initiation factor ...		Lus10039660 [exp]	11.2	0.9075
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10023138 [exp]	13.0	0.8868
AT1G35430			unknown protein		Lus10009461 [exp]	13.3	0.8456
AT4G15940			Fumarylacetoacetate (FAA) hydr...		Lus10006496 [exp]	19.1	0.8979
AT5G23590			DNAJ heat shock N-terminal dom...		Lus10027828 [exp]	20.2	0.8927
AT3G30390			Transmembrane amino acid trans...		Lus10035140 [exp]	22.3	0.9065
AT5G11950		LOG8	LONELY GUY 8, Putative lysine ...		Lus10026131 [exp]	27.6	0.9056
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10008582 [exp]	29.0	0.8861
AT1G17130			Family of unknown function (DU...		Lus10013707 [exp]	29.6	0.8495

Compare expression of checked genes

Lus10018847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.