Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00740 728 / 0 QUA3 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G00750 398 / 3e-133 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33170 396 / 1e-132 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G10440 396 / 2e-132 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G19120 395 / 2e-132 ERD3 early-responsive to dehydration 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G26850 395 / 2e-132 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G18030 392 / 3e-131 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G31850 392 / 3e-131 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT2G45750 378 / 1e-125 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43200 375 / 2e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000808 [exp] 873 / 0 AT4G00740 985 / 0.0 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041363 [exp] 667 / 0 AT4G00740 830 / 0.0 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10005764 [exp] 400 / 4e-134 AT2G45750 811 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10010152 [exp] 394 / 1e-131 AT1G33170 952 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10030479 [exp] 390 / 1e-130 AT1G26850 1057 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10017357 [exp] 390 / 4e-130 AT1G33170 948 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10008298 [exp] 390 / 5e-130 AT4G10440 957 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10034729 [exp] 387 / 1e-129 AT1G31850 991 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10012830 [exp] 387 / 2e-129 AT1G26850 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G075300 [exp] 757 / 0 AT4G00740 965 / 0.0 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G147600 [exp] 407 / 5e-137 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G137300 [exp] 403 / 7e-135 AT4G00750 874 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.003G087600 [exp] 400 / 3e-134 AT4G18030 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 399 / 1e-133 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G146400 [exp] 397 / 3e-133 AT4G18030 1008 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G154400 [exp] 397 / 4e-133 AT4G00750 944 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G075700 [exp] 395 / 2e-132 AT4G00750 955 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G139000 [exp] 394 / 9e-132 AT2G45750 880 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G069000 [exp] 388 / 2e-129 AT1G26850 980 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10018848 pacid=23144657 polypeptide=Lus10018848 locus=Lus10018848.g ID=Lus10018848.BGIv1.0 annot-version=v1.0 ATGCCACACAACAAAATTGCTGAAAGGAAAGGCCATCAAGGATGGATGAAAGAGGACGGTGAATATTTTATTTTCCCTGGTGGTGGTACCATGTTCCCAG AAGGTGCCATTCCTTACATAGAGAAACTTGCCCAGTATATCCCTATTCGAAATGGAGTACTAAGGACTGCCCTTGACATGGGATGTGGGGTTGCTAGCTG GGGAGGATATCTGATGAAAGAAGGAATTATACCACTCTCTTTTGCTCCAAGAGATTCCCACAAATCTCAGATACAGTTTGCGCTTGAAAGAGGAATTCCG GCATTTGTTGCCATGCTTGGAACTCGGAGGCTTCCATTCCCTGCATTCTCCTTTGACTTGGTTCACTGTTCTAGATGTTTAATCCCTTTCACTGCTTACA ATGCAACTTATTTCATTGAAGTGGATCGCTTACTTCGCCCGGGAGGATATTTAGTCATATCTGGTCCACCTGTACAGTGGGCCAAACAAGATAAGGAATG GGCAGATCTTCAGGGTGTTGCAAGAGCGCTTTGTTATGAGCTAATAGCTGTTGATGGGAACACTGTCATTTGGAAAAAACCTTCTGGTGGTTCATGCCTG CCTAGTCACAATGAATTTGGCCTTCAGTTGTGTGGCGAATCAGTTGATGCAAGCTCTGCATGGTACTTTAAGTTGGAGAAATGTGTGACCCCTCAATCTT CAGTCAAGGGGAAGTGTGCTGTTGGTATGATTCCAACGTGGCCAGATAGATTAAACAAGCCACCTGCAAGGGCTGCTCTTATAAAGAGCGGCATAGAATT ATTTGAGGCAGACACTCGTCGCTGGGCTAGGAGGGTTGCATATTACAAGAATTCTCTGAATGTGAAGCTGGGAACTCCTGCGATACGCAATGTGATGGAT ATGAATGCATTTTTTGGAGGCTTTGCTGCAGCTTTAGGATCTGATCCTGTGTGGGTGATGAATGTTGTTCCTGCTCGCAAACCTTCAACTTTGGATGTAA TCTTTGACAGAGGCCTTATAGGCGTTTACCATGATTGGTGCGAACCCTTCTCAACATATCCGCGAAGTTATGATCTAATCCATGTATCTGGAATCGATTC GTTGGTAAAAGCTCCTGGTTCTGTCCAAAACAGGTGCAGCCTCGTGGATGTAATGGTAGAGATGGACAGAATACTGAGGCCAGAAGGAACAGTGGTGATT AGGGACTCACCAGAGGTTATAGAAAGAGTGGCTCGCATAGCTAACAGTGTAAGATGGAAAGCTAGCATACATGAGAAAGAAGAGGAATCACATGGCTCCC AAATGATACTCGTTGCTACCAAGAATTTATTAGGGACTCACCATAGGTTAGAGAAAGAGTGGCTCGCATAG
AA sequence Show only first row Show all	>Lus10018848 pacid=23144657 polypeptide=Lus10018848 locus=Lus10018848.g ID=Lus10018848.BGIv1.0 annot-version=v1.0 MPHNKIAERKGHQGWMKEDGEYFIFPGGGTMFPEGAIPYIEKLAQYIPIRNGVLRTALDMGCGVASWGGYLMKEGIIPLSFAPRDSHKSQIQFALERGIP AFVAMLGTRRLPFPAFSFDLVHCSRCLIPFTAYNATYFIEVDRLLRPGGYLVISGPPVQWAKQDKEWADLQGVARALCYELIAVDGNTVIWKKPSGGSCL PSHNEFGLQLCGESVDASSAWYFKLEKCVTPQSSVKGKCAVGMIPTWPDRLNKPPARAALIKSGIELFEADTRRWARRVAYYKNSLNVKLGTPAIRNVMD MNAFFGGFAAALGSDPVWVMNVVPARKPSTLDVIFDRGLIGVYHDWCEPFSTYPRSYDLIHVSGIDSLVKAPGSVQNRCSLVDVMVEMDRILRPEGTVVI RDSPEVIERVARIANSVRWKASIHEKEEESHGSQMILVATKNLLGTHHRLEKEWLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10018848 [exp]	0	1
AT5G44670			Domain of unknown function (DU...		Lus10008076 [exp]	1.7	0.9103
AT1G31780			unknown protein		Lus10037280 [exp]	2.0	0.9017
AT1G21370			unknown protein		Lus10029764 [exp]	2.0	0.9219
AT5G11980			conserved oligomeric Golgi com...		Lus10026437 [exp]	2.4	0.9152
AT3G46520		ACT12	actin-12 (.1)		Lus10029286 [exp]	3.2	0.8820
AT3G60030	SBP	SPL12	squamosa promoter-binding prot...		Lus10004523 [exp]	4.9	0.8856
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10005560 [exp]	5.9	0.8995
AT2G19450		RDS1, DGAT1, AT...	TRIACYLGLYCEROL BIOSYNTHESIS D...		Lus10021582 [exp]	7.1	0.8660
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10013695 [exp]	7.9	0.8886
AT4G36660			Protein of unknown function (D...		Lus10026030 [exp]	7.9	0.8842

Compare expression of checked genes

Lus10018848 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.