Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00710 727 / 0 BSK3 BR-signaling kinase 3 (.1) AT1G63500 700 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G41260 697 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G59010 679 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT3G54030 655 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT1G01740 608 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT4G35230 568 / 0 BSK1 BR-signaling kinase 1 (.1) AT5G46570 549 / 0 BSK2 BR-signaling kinase 2 (.1) AT5G01060 536 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT3G09240 533 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000806 [exp] 856 / 0 AT4G00710 625 / 0.0 BR-signaling kinase 3 (.1) Lus10037856 [exp] 784 / 0 AT4G00710 764 / 0.0 BR-signaling kinase 3 (.1) Lus10030383 [exp] 777 / 0 AT4G00710 770 / 0.0 BR-signaling kinase 3 (.1) Lus10008530 [exp] 706 / 0 AT1G63500 834 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10008494 [exp] 706 / 0 AT1G63500 831 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10001998 [exp] 696 / 0 AT1G63500 811 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10027743 [exp] 689 / 0 AT3G54030 824 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10035550 [exp] 684 / 0 AT3G54030 817 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10040719 [exp] 651 / 0 AT5G59010 820 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G082400 [exp] 776 / 0 AT4G00710 826 / 0.0 BR-signaling kinase 3 (.1) Potri.002G158400 [exp] 771 / 0 AT4G00710 820 / 0.0 BR-signaling kinase 3 (.1) Potri.003G126700 [exp] 693 / 0 AT1G63500 805 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.001G104700 [exp] 688 / 0 AT1G63500 791 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.006G093900 [exp] 688 / 0 AT3G54030 844 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.016G105800 [exp] 681 / 0 AT3G54030 835 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.001G246400 [exp] 663 / 0 AT5G59010 868 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.009G039500 [exp] 662 / 0 AT5G59010 857 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.004G182800 [exp] 574 / 0 AT4G35230 899 / 0.0 BR-signaling kinase 1 (.1) Potri.009G142800 [exp] 572 / 0 AT4G35230 890 / 0.0 BR-signaling kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10018849 pacid=23144721 polypeptide=Lus10018849 locus=Lus10018849.g ID=Lus10018849.BGIv1.0 annot-version=v1.0 ATGGGAAGCCAGTGTTCCAAGATTGGCGTGCTGCCATGTTGCATTAATTCAAAGGTGAAAGCAGCGGTTCTTGAAGTTTCTCCTCTTGCTGGTGAGAAGG GGGATGATGGTTATGATAATGTGGCTGAATTCAGAGAGTTCACATTAGAGCAATTGAAGAATGCGACCTCTGGTTTTGCGAGTGAGAACATTGTATCTGA ACATGGAGAGAAAGCTCCCAACCTTGTTTACAAAGGCAAGCTCGAAAACCAGTCCAAAATCGCTGTCAAACGCTTCAATACCATAGCCTGGCCTGATGCT CTCCAATTTGTGGAGGAAGCAAGATCAGTTGGGAAGCTCCGGAGCCATAGGTTGGCAAATCTGATTGGTTGTTGTTGTCAAGATGATGAAAGGATGCTGG TTGCAGAATTCATGCCTAACGCTACTCTAGCAAACCATCTTTTCCATTGGGAAATTCAGCCTATGAAGTGGGGAATGCGATTGAGGGTTGTTCTGCATCT TGCACAAGCCCTTGAGTATTGTGGAAACAAAGGGCGCACACTCTATCATGATCTTAACGCCTATAGAATTTTGTTTGATGAGGATGCTAACCCAAGACTA TCAACCTTTGGTTTGATGAAGAACAGTCGGGATGGGAAGAGTTACAGTACTAATCTGGCATTTACTCCCCCTGAATATCTCAGAACGGGGAGGATAGTGC CAGAGAGTTTAATATATAGCTTTGGTACACTTTTACTTGACCTTCTCAGCGGAAAGCATATCCCACCGAACCATGCTCTTGACCTGATACGAGACAGAAA TCTTCACATGTTGACTGATTCATGCTTGGACGGGCACTTCTCCAGTGATGATGTTACTGAGCTAATGCGTTTGGCTTCTCGATGTTTACAATTTGAAGTT CGAGAACGACCCAGCCTGAGAGTTCTAGTGGATTCTTTGACACCTCTTCAGAAGGAAACAGACGTTCCTTCTCATGTGTTGATGGGTATCCCGAGTAGCG AATCACTCTCCCATTTAACCCCATTTGGGGATGCTTGCTCTAGAAAGGATCTAACAGCTATACATGACATCTTAATCAAGCTTGCCTACAAAGATGACCA AGCAGTGACTAATGAGCTCTCATTCCAGCTGTGGACTGATGAAATGCAAGAAACTCTAAACACAAAAAAGAAGGGAGATGCTGCCTTTAAGAATCACAAC TTTAAGGAAGCTATTCACTGCTATACACAGTTCATTGTTGCGGGAACGATGGTTTCTCCAACAGTTCATGCCCGCCGGAGTCTGTCTTATCTCATGAGCG GTGGACAACAACAACAAGAAGAAGCTCTTAGAGACGCGATGCAAGCACAAGTGATTTCCCCTGTATGGCATGTTGCTTCATATCTTCAATGTGTTGCACT TTATGCACTGGGGAGACCAAATGAAGCTTACATGGCACTTAAAGAGGCCACAACTCTTGAATCCGAGATCATGAGTTGA
AA sequence Show only first row Show all	>Lus10018849 pacid=23144721 polypeptide=Lus10018849 locus=Lus10018849.g ID=Lus10018849.BGIv1.0 annot-version=v1.0 MGSQCSKIGVLPCCINSKVKAAVLEVSPLAGEKGDDGYDNVAEFREFTLEQLKNATSGFASENIVSEHGEKAPNLVYKGKLENQSKIAVKRFNTIAWPDA LQFVEEARSVGKLRSHRLANLIGCCCQDDERMLVAEFMPNATLANHLFHWEIQPMKWGMRLRVVLHLAQALEYCGNKGRTLYHDLNAYRILFDEDANPRL STFGLMKNSRDGKSYSTNLAFTPPEYLRTGRIVPESLIYSFGTLLLDLLSGKHIPPNHALDLIRDRNLHMLTDSCLDGHFSSDDVTELMRLASRCLQFEV RERPSLRVLVDSLTPLQKETDVPSHVLMGIPSSESLSHLTPFGDACSRKDLTAIHDILIKLAYKDDQAVTNELSFQLWTDEMQETLNTKKKGDAAFKNHN FKEAIHCYTQFIVAGTMVSPTVHARRSLSYLMSGGQQQQEEALRDAMQAQVISPVWHVASYLQCVALYALGRPNEAYMALKEATTLESEIMS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10018849 [exp]	0	1
AT5G67220			FMN-linked oxidoreductases sup...		Lus10041598 [exp]	2.6	0.7062
AT1G61250		SC3	secretory carrier 3 (.1.2)		Lus10038302 [exp]	6.2	0.5871
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Lus10030718 [exp]	8.9	0.6828
AT2G17220		Kin3	kinase 3, Protein kinase super...		Lus10001392 [exp]	10.7	0.6101
AT1G53590		NTMCTYPE6.1 ,NT...	Calcium-dependent lipid-bindin...		Lus10013710 [exp]	13.5	0.6828
AT3G24530			AAA-type ATPase family protein...		Lus10023642 [exp]	15.3	0.6976
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Lus10034726 [exp]	18.2	0.6352
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Lus10041487 [exp]	24.7	0.6196
AT3G09830			Protein kinase superfamily pro...		Lus10026523 [exp]	25.9	0.6288
AT2G23320	WRKY	WRKY15	WRKY DNA-binding protein 15 (....		Lus10041600 [exp]	31.4	0.6618

Compare expression of checked genes

Lus10018849 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.