Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56870 147 / 2e-36 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G181200 [exp] 235 / 1e-64 AT3G56870 179 / 1e-46 unknown protein Potri.002G262601 [exp] 84 / 1e-18 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018851 pacid=23144767 polypeptide=Lus10018851 locus=Lus10018851.g ID=Lus10018851.BGIv1.0 annot-version=v1.0 ATGGATTTGAGGAGTTCCTACAATTTTCACTTCATTAATGCCATTAAAGATGGTAAGGCAGTGAAGGCCTCAAATGTGTGGCGTGGTAAGCCAGCCCTGA AGTTTAAGAATGTGGAAGATCTGTACGAGTTTTCGGGAAATGGTAGGCATCGCTCATCCGGAAGACATATGATGAAAGTTCTACTGCAAGAGCTTCCTGA GCATGAAGGTGATGAAGGCAAGGTTGAAAATTCACTGGTCACTGGGGGAAGCAGAATACAGATAAAAAGGGAGAGTGGAGCTTTGGAAGTCAACTCTAGT CATGGTGAGAGAGAAGTAGATGAAGACCATAAGGATGATGATGATATCGATATTTTTGATCTTACGCTCAAGCAAATCAGGGCAAGATTGAAAGCAAAGA AACGGAAACGTTCAAGTGCAGAATCAACTGGATGTTGCTCCTCAGTTGGATCGGACAATTCATCTTCCAAATCTGAGATTGATGACTGTAACATGACGGA GTCCCTCCACAGTTTTGCTGCTAAAATCATTAAGAATAAGAAGATGAAGAAAAGGCTGAAAAGAAACAGCAACTTAAAATCATCCCATCATGCCTTATCC ATTGTGAAGTTTGAAGGAGTATCTAACTGTTATGAATGCCCATGTCACTCTGATGCAAGATATGATGCACATGTTGATGTCAATGTCGAGGTTCCTGAGC GTGATCTTGCAGATTGTCAAGCTATTGTCTTAAGTGGCATGGACTCCTCCTATAGTTGGAAAGAGCCGCTTGATTCTGTTATATTCCCTTTCAATGTTGA GCATGGCTTAGGCGATCAGTGTGATGGTGGGATTCTTGAGACTGGTTATGTAGATTGCCAACCAATTTCTGTCGATTCCATGGACGACTCTTGTGGCTGG CTTGTGCCGGTTGTTCCTTCTGGAGCTCCCTTTGATGAACAACCTTGCTCAAGTTTCGGATGTGATGTTGAAATGGTCATCCCAACAGTGTCTTCTGATG AGCTTGTGGAATCTGAAGTTCTGGATTTTCAAACCAGATCTGTTACAGTTGACGGTGGTGCTTTCCAGCCTCTGACGTCAAATTACTTCAGTAACGAGCC TCAATGCTGTTCTGGCCAGAGTCATTTTCAAACAGAGGAGTTTGATAGAGATAATGATGATGTCTTCCCGTATCAAAGAACAACTTGTGTCAATGGGCTA CAAAACTATTCTGTTAATGAAATGTCTTACCAACATTTGGAGGAGACAGGAAAGGCATCACCTCCCAGTGCGAACACGTCTCAATATTGTGCTTCGAATG AAGAATCGGATAAAGACATAGAGCACGTTGTTCCACTTGGTAAAGCTGATGCAGAAGACTTGGGACTGCGAGTTATGATTCTAGACAAAGCAGGAGTCGT CGTTGATCAGTTGGCAACAAAGTTGTCTTCATCAAAATTTGAGAATCTGGTTGTTGATTCACATGAGAGAGATGAGTTCGGCGAATCCGTGTCTCCCAGT AAGGGTCCATCCTTAACGGTACTTGACGAATCTGAAGATGATTTACTCGTCAGTAACAATGAGAAGTTGCAGAATGATACCAGCCAGTTCGAAATCACTA TAAAATATAGCACTGAATGCTTGGCAGATTCAAGTCTTCCTGGGGGTGAAGTTGAAGATGAAAAAACCTGCCTAGAAACCAACTTTGAAAGCTGTACTGG TGCAGTCGTGGAGGAACAAGTTGAGATTTCATTTCCAAACTCAAGCCAGAATGACTCACTTTCTGATGACTCTTCTCCAGACGTGGAAACGGAGTCTCTG TCATCTCCCAGTGCTGTTTCGGTTGGAAGAAAGATTTTTTGCACTCATCAGCAAGTTCAGTTAATTGATGGTGAGGACTGTTGTATCGTGGAGCAGCAAC AGCAGCCTCCTGAAAGGCTCCTTTCAACCAGGAAGACCATCTCTTCAACGTCTCAAGAAAAGCTACGGAAAGCTATGAACTCCAACGAGTTAGACGATGA GCAATTGTACAAATATGCAAGGAAGTTATGTTATGGAAAGCGCACTAGTAATACAAATGCTAGGTCAGATGAGATCAATCAGCAGGTTAAGAGAGTTGAA AACACAATAAGCCCTCATCAATTGATGAGGAAACTCAAAAGTGGGAAACCCAGCTGCCCACCTAAAGATATTCCCAGGGTTGCTCGTGCTATCCGCAATT CACCCCGTTTCAGTACAGGGTGCACGTCCGTACAAAGTTGCTCAGAGAATGCCATTATGTTCACACAGAACCAGATGCGCGACTTCGAGTCCATGACTAC CAAACTTGCAAAGGAATTGAAGTCCATGAAGGAAATTGTTGAATCAACATTGCTGTACAAGGTCAATCCTTGTACCACCCCCAACTATACTCACCAACAG GTGAGTGGTGCCATAGAGAAAGCAACAAAAGCAGAAGAAACAGCACGGCGATGGATCTCTACGATGGGAAGGGATTGTGATCGCTTCTGCAAGCTGATGA AACTCGTCCAGAAAGGTAACTCTACTCCAGCGCAGGCTGTCCAGAAGGAGAAAAGGAAGATATCATTTGCAGATGAAGCTGGCGGAAACCTTTGCCACGT CAAGACTTTCAAGAGCGAGGTAGAGTTCATTGCTGATGAAGCCATCGTTGTTGATTGA
AA sequence Show only first row Show all	>Lus10018851 pacid=23144767 polypeptide=Lus10018851 locus=Lus10018851.g ID=Lus10018851.BGIv1.0 annot-version=v1.0 MDLRSSYNFHFINAIKDGKAVKASNVWRGKPALKFKNVEDLYEFSGNGRHRSSGRHMMKVLLQELPEHEGDEGKVENSLVTGGSRIQIKRESGALEVNSS HGEREVDEDHKDDDDIDIFDLTLKQIRARLKAKKRKRSSAESTGCCSSVGSDNSSSKSEIDDCNMTESLHSFAAKIIKNKKMKKRLKRNSNLKSSHHALS IVKFEGVSNCYECPCHSDARYDAHVDVNVEVPERDLADCQAIVLSGMDSSYSWKEPLDSVIFPFNVEHGLGDQCDGGILETGYVDCQPISVDSMDDSCGW LVPVVPSGAPFDEQPCSSFGCDVEMVIPTVSSDELVESEVLDFQTRSVTVDGGAFQPLTSNYFSNEPQCCSGQSHFQTEEFDRDNDDVFPYQRTTCVNGL QNYSVNEMSYQHLEETGKASPPSANTSQYCASNEESDKDIEHVVPLGKADAEDLGLRVMILDKAGVVVDQLATKLSSSKFENLVVDSHERDEFGESVSPS KGPSLTVLDESEDDLLVSNNEKLQNDTSQFEITIKYSTECLADSSLPGGEVEDEKTCLETNFESCTGAVVEEQVEISFPNSSQNDSLSDDSSPDVETESL SSPSAVSVGRKIFCTHQQVQLIDGEDCCIVEQQQQPPERLLSTRKTISSTSQEKLRKAMNSNELDDEQLYKYARKLCYGKRTSNTNARSDEINQQVKRVE NTISPHQLMRKLKSGKPSCPPKDIPRVARAIRNSPRFSTGCTSVQSCSENAIMFTQNQMRDFESMTTKLAKELKSMKEIVESTLLYKVNPCTTPNYTHQQ VSGAIEKATKAEETARRWISTMGRDCDRFCKLMKLVQKGNSTPAQAVQKEKRKISFADEAGGNLCHVKTFKSEVEFIADEAIVVD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56870			unknown protein		Lus10018851 [exp]	0	1
AT3G10650		AtNUP1	unknown protein		Lus10008959 [exp]	1.4	0.9281
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10020118 [exp]	2.4	0.9169
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Lus10021059 [exp]	3.5	0.9107
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10026920 [exp]	6.0	0.8898
AT4G04790			Tetratricopeptide repeat (TPR)...		Lus10043070 [exp]	8.2	0.9055
AT1G64550		SCORD5, AtGCN20...	susceptible to coronatine-defi...		Lus10032431 [exp]	8.5	0.8695
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10012434 [exp]	9.2	0.8827
AT5G17930			MIF4G domain-containing protei...		Lus10019865 [exp]	10.0	0.8719
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10028521 [exp]	11.4	0.8364
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10028054 [exp]	11.8	0.8169

Compare expression of checked genes

Lus10018851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.