Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58140 664 / 0 phenylalanyl-tRNA synthetase class IIc family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028547 [exp] 836 / 0 AT3G58140 665 / 0.0 phenylalanyl-tRNA synthetase class IIc family protein (.1) Lus10018854 [exp] 81 / 4e-16 AT1G21660 402 / 5e-134 Chaperone DnaJ-domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G105200 [exp] 712 / 0 AT3G58140 680 / 0.0 phenylalanyl-tRNA synthetase class IIc family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [flax] [poplar] tRNA_synt_II PF01409 [flax] [poplar] tRNA-synt_2d tRNA synthetases class II core domain (F) CL0040 [flax] [poplar] PF03147 [flax] [poplar] FDX-ACB Ferredoxin-fold anticodon binding domain
Representative CDS sequence Show only first row Show all	>Lus10018853 pacid=23144716 polypeptide=Lus10018853 locus=Lus10018853.g ID=Lus10018853.BGIv1.0 annot-version=v1.0 ATGGCGTTGTCAATCGCACAACTTACTTTCTTCTCCAGAGCAGCATCAGCATCAGCATCAACTTCCTCCTCCTTTCTACCTCGAACGAATGGAGGCTTCA ATCGCTTCATTTTCTCCGTGCCTTTCTCCGGAGCTGCTGCTGTCTCCACCGGGAAAACAAGTTGGAGAGCTCCTGCCTCGTCCTCGATTCTGGAGCTCGG TGGAGTCAAGATTTCTAGAGACGATGTGGTGAGGGATGATGATCCTACCAACAATGTGCCGGATTCAATCTTCTCGAAGCTCGGTATGCAGCTCCACAAG AGGAACAAGCACCCGTTGGGAATTCTGAAGAATGCGATTTATGAGTATTTCGATGCGAATTACTCGAACAAGTTTGATAAGTTTGATGACCTGTGCCCTC TCGTGACTGTTAAGCAGAATTTCGATGATGTTCTGGTTCCTGCTGACCATGTCTCCCGAAGGTATAACGATACTTATTATGTTGATTCGCAAACTGTATT GAGGTGTCACACCAGTGCTCATCAAGCTGAGCTGTTGAGGAATGGGCACACGCATTTCCTTGTGACTGGTGATGTTTACCGTAGAGATTCTATTGATTCG ACTCACTATCCTGTATTTCATCAGATGGAAGGCTTTCGTGTGTTCTCTCCTGAAGACTGGGAAGCATCAGGTTCTGATGGCACGTCTTATGCTGCAGAGG ATTTGAAGAAATGCCTTGAGGGGCTAGCCGTTCACTTATTTGGTGCTGTGGAGATGCGTTGGATTGATGCGTACTTCCCTTTCACAAATCCATCTTTTGA ACTCGAGATATATTTTCAGGAGAAATGGATGGAAGTTCTAGGCTGCGGGGTCACTGAACAAGTTATTTTAAGGGATAATGGCCAACCCGGTAAAGTTGCT TGGGCATTTGGACTTGGATTGGAGCGACTGGCAATGGTTTTGTTTGACATACCTGATATCCGGCTTTTCTGGTCGAGTGATGACCGGTTTAATTCTCAGT TTGTTAAAGGCCAGATGGGCATCAAATTCAAGCCATTCTCAAAGTACCCTCCATGTTACAAAGACATGAGCTTTTGGATCAACGATTCGTTCACCGAAAA CAATTTATGTGAAGTTGTCAGAGGAGTGGCTGGGGATCTTGCTGAGGAGGTGCAGTTGATAGACAATTTTACCAACAAGAAGGGAATGACGAGTCATTGC TATCGGATTGCTTACCGGTCCATGGAACGCTCACTTACAGATGACGAGATCAACAAGTTGCAGGAGAAAGTAAGGGAAGTAGCTGAATCCAAGCTAAACG TGGTTCTGAGATGA
AA sequence Show only first row Show all	>Lus10018853 pacid=23144716 polypeptide=Lus10018853 locus=Lus10018853.g ID=Lus10018853.BGIv1.0 annot-version=v1.0 MALSIAQLTFFSRAASASASTSSSFLPRTNGGFNRFIFSVPFSGAAAVSTGKTSWRAPASSSILELGGVKISRDDVVRDDDPTNNVPDSIFSKLGMQLHK RNKHPLGILKNAIYEYFDANYSNKFDKFDDLCPLVTVKQNFDDVLVPADHVSRRYNDTYYVDSQTVLRCHTSAHQAELLRNGHTHFLVTGDVYRRDSIDS THYPVFHQMEGFRVFSPEDWEASGSDGTSYAAEDLKKCLEGLAVHLFGAVEMRWIDAYFPFTNPSFELEIYFQEKWMEVLGCGVTEQVILRDNGQPGKVA WAFGLGLERLAMVLFDIPDIRLFWSSDDRFNSQFVKGQMGIKFKPFSKYPPCYKDMSFWINDSFTENNLCEVVRGVAGDLAEEVQLIDNFTNKKGMTSHC YRIAYRSMERSLTDDEINKLQEKVREVAESKLNVVLR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58140			phenylalanyl-tRNA synthetase c...		Lus10018853 [exp]	0	1
AT3G11170		AtFAD7, FADD, F...	FATTY ACID DESATURASE D, fatty...		Lus10040660 [exp]	4.9	0.8072
AT4G33510		DHS2	3-deoxy-d-arabino-heptulosonat...		Lus10001002 [exp]	10.0	0.7922
AT3G58060			Cation efflux family protein (...		Lus10029304 [exp]	11.7	0.7334
AT3G23790		AAE16	acyl activating enzyme 16, AMP...		Lus10023224 [exp]	12.4	0.7868
AT1G74960		ATKAS2, KAS2, F...	ARABIDOPSIS BETA-KETOACYL-ACP ...		Lus10034886 [exp]	15.0	0.8008
					Lus10001500 [exp]	27.9	0.7098
AT4G19450			Major facilitator superfamily ...		Lus10034738 [exp]	40.0	0.7275
AT2G45150		CDS4	cytidinediphosphate diacylglyc...		Lus10009281 [exp]	48.7	0.7096
AT3G46100		ATHRS1	Histidyl-tRNA synthetase 1 (.1...		Lus10014422 [exp]	51.7	0.6869
AT1G29370			Kinase-related protein of unkn...		Lus10020762 [exp]	54.1	0.7485

Compare expression of checked genes

Lus10018853 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.