Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21660 242 / 3e-72 Chaperone DnaJ-domain superfamily protein (.1) AT4G12780 205 / 2e-56 Chaperone DnaJ-domain superfamily protein (.1.2) AT4G12770 203 / 9e-56 Chaperone DnaJ-domain superfamily protein (.1.2) AT4G36520 165 / 1e-42 Chaperone DnaJ-domain superfamily protein (.1) AT1G75310 160 / 4e-41 AUL1 auxilin-like 1, auxin-like 1 protein (.1) AT1G75100 116 / 4e-27 JAC1 J-domain protein required for chloroplast accumulation response 1 (.1) AT1G30280 91 / 3e-19 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028548 [exp] 637 / 0 AT1G21660 402 / 1e-133 Chaperone DnaJ-domain superfamily protein (.1) Lus10016079 [exp] 216 / 6e-60 AT4G12770 664 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10016078 [exp] 213 / 2e-58 AT4G12750 723 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10012303 [exp] 211 / 2e-58 AT4G12770 618 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10012302 [exp] 208 / 8e-57 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10041769 [exp] 161 / 2e-41 AT1G75310 328 / 3e-92 auxilin-like 1, auxin-like 1 protein (.1) Lus10033205 [exp] 137 / 2e-33 AT1G75310 259 / 3e-70 auxilin-like 1, auxin-like 1 protein (.1) Lus10010642 [exp] 133 / 4e-32 AT1G75310 261 / 8e-71 auxilin-like 1, auxin-like 1 protein (.1) Lus10024270 [exp] 131 / 2e-31 AT1G75310 290 / 2e-80 auxilin-like 1, auxin-like 1 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G079200 [exp] 343 / 7e-111 AT1G21660 351 / 2e-115 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G181700 [exp] 301 / 8e-95 AT1G21660 312 / 3e-100 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G217200 [exp] 214 / 2e-59 AT4G12780 319 / 2e-94 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.014G197600 [exp] 208 / 3e-57 AT4G12780 329 / 1e-97 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.005G120700 [exp] 170 / 3e-44 AT4G36520 299 / 1e-82 Chaperone DnaJ-domain superfamily protein (.1) Potri.007G022600 [exp] 169 / 6e-44 AT4G36520 306 / 7e-85 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G229300 [exp] 155 / 2e-39 AT4G36520 248 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G033800 [exp] 145 / 4e-36 AT4G36520 241 / 4e-64 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G042600 [exp] 130 / 1e-31 AT1G75100 261 / 2e-77 J-domain protein required for chloroplast accumulation response 1 (.1) Potri.002G134300 [exp] 125 / 8e-30 AT1G75100 192 / 3e-52 J-domain protein required for chloroplast accumulation response 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018854 pacid=23144649 polypeptide=Lus10018854 locus=Lus10018854.g ID=Lus10018854.BGIv1.0 annot-version=v1.0 ATGGACGAATTTGGTGTTCTGACGGAGCGATTCGGGCTGAAGCCGCAAGGGAAATCGGCTCCGATGGCCTCATCGAAACGACCCAACTCAGCTACCGCTG CACCGACCCGGACCCGGCCCGACTCGGTTTCCAACCACCGACACCACCAACCCTCCACGCATGCGTATGGTGGTGCCAATTCGTTTAGTAATGGGTCGTT TGTCGGCGGAAGCAGCACGAAAGCTCAGAGCTTTGGAGGTTCTTCTGCTGATGGGTTTGATATCTTTGATGGGTTTGACAAGAGTTCGAAGCAGGGTAGC AGCAATGGCGGTGGGTCTTCTTTCGATTTTGATTCGATATTTTCAGGGACGAATCGTTCGAATGGCGGATCGTCATTCGGCAATGACGATATATTTGGCG GTATTGGCGGGTTGGGTAGCTCGAATTCTGCTAGCAATGATAACATTTTTGGGTCGTTTGGTTCTAAGCCGAAGCAAGGCAGTCCGATCGATGACTTGTT GGGGAATTTCGGTTCGAATTCAGGCGCTGCTTCTTCTGTTAATAGGAAAGGATCATCTGGGTTTGATGATGACTTGGTGCCTGGGTTTACTTCGAGCACG ACATCGCATAAAGGAAGTGCTACACCGGGTTTCACCTCAGTAGACGACCCTTTCGTAGTCTTGGAATCAACTTCAACAGCTACAACGAATTCCTCATTTG TGGATCCACTTGAGGAGCTGACTAAATTCAGTCGTTCAGGAGGCGGAAGTACAAGGCCTGCAAATGGTTCATCAAAATTTTCATCGTCGTTGAAGCCCCC TCCGAAACCTGGACAGGTTCTGAAGTCGGTGAAAGTAAAAAGCTCTCATACATCCTCAATTGATGAACTTGAGGAATTCGCCACCTGTAGAGTGCGAGCT ACTCCTAATAGGCAGTCAGAAGTCAGAGAAAATGGGAAGAAGACGCCACAGAAGAATGTGGATGATCTGGATTCCTTTTTCGGAATGGGTGCGAGATCAA GTAGTGTACCGAAGTCGAGGAGCTCATCTTCGGATCCTCTATTTGGCGCAACTGTGAATAGCAGAGGTAAAGCTCAAGTGCCCAGTGTGAAGGCTTCTGG TGCTTCATCTAGTATGAGGAAGGCGTCGTCTGCTGCAAATATGTTTGACGACTTTTCTTCCCTTTTCGGAGATGCCTCTCTCTCTGGGGAATTCGAAGAA GTTGAAGGAGAAACAGAAGAAAGACGAAGAGCGAGGTTGGAACGCCACCAGAGGACCAAACACAGAGTGGCACAAGCGGTTGCTGATATGAACCAACGTG ACTATCAAACTCAACGAGAACAAGAAGAGAGGCGTATGATCGCTGAGAAAATGGATCTCGACATAAAACGGTGGGCTGCTGGGAAAGAAGGCAACATGCG TGCTCTGCTATCTTCTTTGCAATACGTGCTCTGGACTGAATGTGGTTGGGATCCTGTCTCTCTGACCGATCTGATTACATCTTCTTCAGTGAAGAAAGTA TACCGAAAAGCAACTTTATGCGTGCATCCGGATAAGGTCCAGCAGAAAGGTGCTACACTCGAACAGAAATACATCGCCGAGAAGGTCTTCGATATCCTCA AGTCGAAAGAATTTGCAAATGGTTACACCTACAGCAAGATATTCCAAACCCACAGAGATGGCAGACTTCTGAAACCATACCTGCAACTTGTTGATCTCAT CGTTTGTAAGGGAGCGTTCCATGGGCCAATAAGTAATCCAATAGCAATGGCTCGTCATTCCCTTCTTGTTCGTGAACTTGTCTATCAACTGGACCTCCTC AGCAAGATCCCCCAGCTACTCCTCAGACAACTCCACACAGATTCTCGAGCTCGAAAGATGGATTAG
AA sequence Show only first row Show all	>Lus10018854 pacid=23144649 polypeptide=Lus10018854 locus=Lus10018854.g ID=Lus10018854.BGIv1.0 annot-version=v1.0 MDEFGVLTERFGLKPQGKSAPMASSKRPNSATAAPTRTRPDSVSNHRHHQPSTHAYGGANSFSNGSFVGGSSTKAQSFGGSSADGFDIFDGFDKSSKQGS SNGGGSSFDFDSIFSGTNRSNGGSSFGNDDIFGGIGGLGSSNSASNDNIFGSFGSKPKQGSPIDDLLGNFGSNSGAASSVNRKGSSGFDDDLVPGFTSST TSHKGSATPGFTSVDDPFVVLESTSTATTNSSFVDPLEELTKFSRSGGGSTRPANGSSKFSSSLKPPPKPGQVLKSVKVKSSHTSSIDELEEFATCRVRA TPNRQSEVRENGKKTPQKNVDDLDSFFGMGARSSSVPKSRSSSSDPLFGATVNSRGKAQVPSVKASGASSSMRKASSAANMFDDFSSLFGDASLSGEFEE VEGETEERRRARLERHQRTKHRVAQAVADMNQRDYQTQREQEERRMIAEKMDLDIKRWAAGKEGNMRALLSSLQYVLWTECGWDPVSLTDLITSSSVKKV YRKATLCVHPDKVQQKGATLEQKYIAEKVFDILKSKEFANGYTYSKIFQTHRDGRLLKPYLQLVDLIVCKGAFHGPISNPIAMARHSLLVRELVYQLDLL SKIPQLLLRQLHTDSRARKMD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21660			Chaperone DnaJ-domain superfam...		Lus10018854 [exp]	0	1
AT3G62220			Protein kinase superfamily pro...		Lus10004524 [exp]	1.0	0.8599
AT2G17200		DSK2	ubiquitin family protein (.1)		Lus10023934 [exp]	3.2	0.8102
AT5G18190			Protein kinase family protein ...		Lus10011091 [exp]	4.7	0.8519
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Lus10034151 [exp]	6.2	0.8154
AT3G16090		AtHrd1A	homolog of yeast Hrd1, RING/U-...		Lus10040359 [exp]	6.9	0.8140
AT2G30910		ARPC1B, ARPC1, ...	actin-related protein C1A (.1....		Lus10031375 [exp]	8.0	0.8024
AT5G03470		ATB' ALPHA, ATB...	Protein phosphatase 2A regulat...		Lus10023920 [exp]	10.2	0.8037
AT3G59350			Protein kinase superfamily pro...		Lus10025496 [exp]	13.5	0.7892
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10033335 [exp]	13.6	0.8089
AT3G62220			Protein kinase superfamily pro...		Lus10010072 [exp]	13.6	0.7526

Compare expression of checked genes

Lus10018854 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.