Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11050 422 / 3e-143 Protein kinase superfamily protein (.1) AT2G48010 302 / 1e-96 RKF3 receptor-like kinase in in flowers 3 (.1) AT4G01330 231 / 1e-70 Protein kinase superfamily protein (.1.2) AT4G34500 227 / 9e-70 Protein kinase superfamily protein (.1) AT1G01540 228 / 1e-69 Protein kinase superfamily protein (.1.2) AT1G29720 232 / 1e-67 Leucine-rich repeat transmembrane protein kinase (.1) AT1G09440 221 / 3e-67 Protein kinase superfamily protein (.1) AT1G16670 218 / 7e-67 Protein kinase superfamily protein (.1) AT1G56720 219 / 4e-66 Protein kinase superfamily protein (.1.2.3) AT3G09010 216 / 4e-66 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028549 [exp] 637 / 0 AT1G11050 448 / 8e-155 Protein kinase superfamily protein (.1) Lus10029711 [exp] 568 / 0 AT1G11050 549 / 0.0 Protein kinase superfamily protein (.1) Lus10028551 [exp] 390 / 8e-131 AT1G11050 442 / 2e-148 Protein kinase superfamily protein (.1) Lus10018860 [exp] 377 / 1e-128 AT1G11050 384 / 6e-129 Protein kinase superfamily protein (.1) Lus10001295 [exp] 380 / 3e-126 AT1G11050 770 / 0.0 Protein kinase superfamily protein (.1) Lus10029714 [exp] 377 / 3e-126 AT1G11050 411 / 6e-137 Protein kinase superfamily protein (.1) Lus10028552 [exp] 373 / 6e-124 AT1G11050 463 / 1e-156 Protein kinase superfamily protein (.1) Lus10012701 [exp] 373 / 1e-123 AT1G11050 760 / 0.0 Protein kinase superfamily protein (.1) Lus10018861 [exp] 368 / 5e-122 AT1G11050 465 / 4e-157 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G181800 [exp] 576 / 0 AT1G11050 604 / 0.0 Protein kinase superfamily protein (.1) Potri.017G132800 [exp] 430 / 1e-145 AT1G11050 805 / 0.0 Protein kinase superfamily protein (.1) Potri.017G133000 [exp] 429 / 1e-145 AT1G11050 830 / 0.0 Protein kinase superfamily protein (.1) Potri.004G084900 [exp] 416 / 3e-140 AT1G11050 821 / 0.0 Protein kinase superfamily protein (.1) Potri.017G132250 [exp] 322 / 2e-108 AT1G11050 430 / 2e-148 Protein kinase superfamily protein (.1) Potri.014G136400 [exp] 298 / 2e-94 AT2G48010 794 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.014G136466 [exp] 296 / 2e-93 AT2G48010 792 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.005G040200 [exp] 277 / 5e-87 AT2G48010 613 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.013G028000 [exp] 272 / 4e-86 AT2G48010 497 / 6e-171 receptor-like kinase in in flowers 3 (.1) Potri.001G204000 [exp] 238 / 7e-75 AT1G52540 427 / 7e-150 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10018855 pacid=23144660 polypeptide=Lus10018855 locus=Lus10018855.g ID=Lus10018855.BGIv1.0 annot-version=v1.0 ATGGTCAGCGATCTCGGTCCGTTGGATGCCAAAACCGCCGGGTGCATTCTCGCCCTGCCGTTGAAGAACGCGAGAAGCCCTAGCAATGGCGGTAATAAGA ATAAGAACAGTAACAAATTAGGAATGATTTTAGGGATTGTGTTTGGAATCATTGGAGCTGTTATTCTCGCTGGATTAGGTATTGTTCTGTACAGGAAGAG GAAAGTTAGAAAGACCGTTGAAGCTACTCATGAACAGTATGTAAGCAGCTTCAAATCGGCTGTAATGCCCAATTCCGGTGCGAGATGGTTCCAAGGATCC GAGCTCGAAAAGGCGACGAACGGATTCAACCAGAAGAATTTCTTAGGGAAAGGAGCTTATGGCGTTGTATACAAAGGTGTTCTTCCCGACGGAAGCTATA TAGCAGTAAAGGAGCTTCACGATCAGGATAATTTACCAGACGAGGAGTTCTTCAACGAGGTCGAAATCATAAGCAAGATTCGACACAGGAATCTTCTCTC GTTACGAGGATGTTGTGCCACGAGTGATGTCTCGAGAGGTAAGAGGAGGTTTCTGGTTTACGACTACATGTCGAATGGAAGTCTTGGCGATCATTTAGCT AATGAACATACTAGGAACCAGCTGACATGGCCGCACAGGAAGAACGTTGTCCTCGATATCGCGAAGGGACTAGCGTATTTACACCACGGGATCAAGCCAG CGATCTATCATCGGGACATCAAGGCGAATAATATACTGTTGGATAACGAAATGAAGGCGAAAGTGGCCGATTTCGGACTGGCGAAGCAGAGTACGGAAGG GCAGTCTCATTTGACGACCAGAGTCGCGGGGACTCACGGGTATTTAGCACCCGAGTATGCATTGTACGGGCAGCTGACTGAGAAGAGCGATGTTTATAGT TTCGGTATCGTGGTGCTGGAGGTGATGAGCGGGAGGAAAGTGATCGACACGACATCGAGCTCGTCGTATCTTTTGATAACGGACTGGGCGTGGATGCTGG TGAAATCGGGAAGGATGGAGGATGTTTTCGACGAGGCGATTAGGGACCAGGGACCGGGCGGGGTGATGGAAAGGTTTGTACTTGTGGGGATGCTCTGTGC TCATGTGTTGGTGGCGTTTAGACCTACGATTGCTGATGCTTTGAAGATGCTGGAGGGGGATATTGATATCCCTAAGTTGCCTGATCGGCCGATGCCGTTG AGTCATGAATCGTTTCGGCATGTTGTGTCTAAGGTTTCGAATAATGGCTCATCAGTGAGCGAGCGGTCGATAACGAACAGTTCGAGCACGAGCTCGATGG CTTGA
AA sequence Show only first row Show all	>Lus10018855 pacid=23144660 polypeptide=Lus10018855 locus=Lus10018855.g ID=Lus10018855.BGIv1.0 annot-version=v1.0 MVSDLGPLDAKTAGCILALPLKNARSPSNGGNKNKNSNKLGMILGIVFGIIGAVILAGLGIVLYRKRKVRKTVEATHEQYVSSFKSAVMPNSGARWFQGS ELEKATNGFNQKNFLGKGAYGVVYKGVLPDGSYIAVKELHDQDNLPDEEFFNEVEIISKIRHRNLLSLRGCCATSDVSRGKRRFLVYDYMSNGSLGDHLA NEHTRNQLTWPHRKNVVLDIAKGLAYLHHGIKPAIYHRDIKANNILLDNEMKAKVADFGLAKQSTEGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYS FGIVVLEVMSGRKVIDTTSSSSYLLITDWAWMLVKSGRMEDVFDEAIRDQGPGGVMERFVLVGMLCAHVLVAFRPTIADALKMLEGDIDIPKLPDRPMPL SHESFRHVVSKVSNNGSSVSERSITNSSSTSSMA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11050			Protein kinase superfamily pro...		Lus10018855 [exp]	0	1
AT4G30600			signal recognition particle re...		Lus10017891 [exp]	1.4	0.9660
AT1G11050			Protein kinase superfamily pro...		Lus10028549 [exp]	1.7	0.9632
AT1G63830			PLAC8 family protein (.1.2.3)		Lus10017509 [exp]	2.4	0.9615
AT4G24290			MAC/Perforin domain-containing...		Lus10012717 [exp]	5.7	0.9566
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10006718 [exp]	10.6	0.9642
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10019348 [exp]	11.7	0.9625
AT1G15530			Concanavalin A-like lectin pro...		Lus10019879 [exp]	12.8	0.9569
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10030022 [exp]	13.1	0.9600
AT1G66880			Protein kinase superfamily pro...		Lus10028494 [exp]	21.5	0.9608
AT1G54320			LEM3 (ligand-effect modulator ...		Lus10001762 [exp]	21.7	0.9303

Compare expression of checked genes

Lus10018855 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.