Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21090 162 / 2e-49 Cupredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028576 [exp] 376 / 6e-133 AT1G21090 182 / 6e-57 Cupredoxin superfamily protein (.1) Lus10029783 [exp] 217 / 5e-70 AT1G21090 172 / 1e-52 Cupredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G067600 [exp] 209 / 1e-67 AT1G21090 189 / 7e-60 Cupredoxin superfamily protein (.1) Potri.005G192800 [exp] 185 / 5e-58 AT1G21090 159 / 7e-48 Cupredoxin superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018856 pacid=23144748 polypeptide=Lus10018856 locus=Lus10018856.g ID=Lus10018856.BGIv1.0 annot-version=v1.0 ATGATGATGATGATGAACATCAACCACCATTACCCCTTTCTTCTTCTTCTTCACTTCCTTTTCTTCACCACTTCCCCAATCCTCTGCCATTCCTCCGCCA CCATCCTCGTCGACGGCGTCTCCCCCTGGCAAAACCCTTCTCTCTCCGTCGGCGACTCTGTCATCTTCAAGCACAAGTATGGCTACAGTCTCTACATCTT CCAGAGCCACACTGCATTTGATCTCTGCAACTTCACTCAAGCCACTCTCCTCGCTGACCCCAACTCCCCTGCTTCCGGCTCTTACTCTTGGCACACTTCC AGACCTGGGTTCTTCTACTTCGCCTTCTCCAACGGCTCTTCCTTGTCGTCGTGCGATCGTTACTCGCAGAAGCTTGCAATCAAGGTATCACCGGCACCGG CGCCAAAATCTTCACCGACTCCGGTTTCCGGGAGAGGAGTGTCAGCTTCTCCAGCATACCCGTGGCCGTTTCAGCCACGGGAGAAGACTGTTGCTGCTTG GGCGCCGTCTCCGGCACCGAATGTCAGCGGAGGAAGGTTTGGAGGAGCTAGTGCTCCGATGAAGGTGCGGAAGGTGTTGCCGGAGAAAGGAGGAGGGATG GCGTTCATAAACAGTAATCCGGCGGTTCCTCTGCCGAACGGGGAAGTTGATTCAGCTACCATTCGTCCTCTGCCTACTTCCGCCGATGCAAGCGGTGGTG GCTATAATCGGATGAAGAGGAAAGGCATGATTGGTGTTATGAGTGCAATATTCTTGACATGGCTATGCTTATGA
AA sequence Show only first row Show all	>Lus10018856 pacid=23144748 polypeptide=Lus10018856 locus=Lus10018856.g ID=Lus10018856.BGIv1.0 annot-version=v1.0 MMMMMNINHHYPFLLLLHFLFFTTSPILCHSSATILVDGVSPWQNPSLSVGDSVIFKHKYGYSLYIFQSHTAFDLCNFTQATLLADPNSPASGSYSWHTS RPGFFYFAFSNGSSLSSCDRYSQKLAIKVSPAPAPKSSPTPVSGRGVSASPAYPWPFQPREKTVAAWAPSPAPNVSGGRFGGASAPMKVRKVLPEKGGGM AFINSNPAVPLPNGEVDSATIRPLPTSADASGGGYNRMKRKGMIGVMSAIFLTWLCL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21090			Cupredoxin superfamily protein...		Lus10018856 [exp]	0	1
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10002482 [exp]	1.0	0.8997
AT1G53730		SRF6	STRUBBELIG-receptor family 6 (...		Lus10037464 [exp]	1.4	0.8740
AT5G19160		TBL11	TRICHOME BIREFRINGENCE-LIKE 11...		Lus10034041 [exp]	2.4	0.8686
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Lus10007312 [exp]	3.0	0.8449
AT2G47500			P-loop nucleoside triphosphate...		Lus10010300 [exp]	4.6	0.8730
AT5G46700		TRN2, TET1	TORNADO 2, TETRASPANIN 1, Tetr...		Lus10001668 [exp]	5.5	0.8703
AT4G23740			Leucine-rich repeat protein ki...		Lus10032351 [exp]	7.5	0.8705
AT5G23100			Protein of unknown function, D...		Lus10000863 [exp]	7.5	0.8635
AT5G60620		GPAT9	glycerol-3-phosphate acyltrans...		Lus10014443 [exp]	7.7	0.8399
AT5G43160		QWRF9	QWRF domain containing 9, Fami...		Lus10007759 [exp]	9.2	0.8054

Compare expression of checked genes

Lus10018856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.