Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44080 96 / 1e-23 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G03970 81 / 3e-18 bZIP GBF4 G-box binding factor 4 (.1) AT1G45249 47 / 5e-06 bZIP AtABF2, ATAREB1, AREB1, ABF2 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) AT1G49720 46 / 8e-06 bZIP ABF1 abscisic acid responsive element-binding factor 1 (.1.2) AT4G34000 45 / 2e-05 bZIP AtABF3, ABF3, DPBF5 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) AT2G41070 44 / 4e-05 bZIP DPBF4, ATBZIP12, EEL ENHANCED EM LEVEL, Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT3G19290 44 / 5e-05 bZIP AREB2, ABF4 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) AT3G56850 44 / 5e-05 bZIP DPBF3, AREB3 ABA-responsive element binding protein 3 (.1) AT2G36270 42 / 0.0001 bZIP EEL, GIA1, ABI5 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G17770 40 / 0.0005 bZIP FDP, ATBZIP27 FD PARALOG, basic region/leucine zipper motif 27 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028575 [exp] 246 / 4e-82 AT5G44080 191 / 2e-59 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10029784 [exp] 125 / 1e-34 AT5G44080 166 / 7e-49 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10042811 [exp] 67 / 2e-13 AT5G44080 86 / 2e-19 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10019850 [exp] 44 / 3e-05 AT4G34000 189 / 2e-57 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Lus10002399 [exp] 44 / 4e-05 AT3G19290 203 / 2e-61 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10009755 [exp] 44 / 6e-05 AT1G45249 283 / 3e-91 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Lus10006489 [exp] 44 / 6e-05 AT1G45249 297 / 1e-97 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Lus10027897 [exp] 44 / 7e-05 AT3G19290 289 / 1e-93 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10017049 [exp] 42 / 0.0001 AT2G36270 321 / 1e-106 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G067400 [exp] 122 / 2e-33 AT5G44080 141 / 2e-39 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.005G192900 [exp] 120 / 1e-32 AT5G44080 142 / 5e-40 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.009G101200 [exp] 45 / 2e-05 AT4G34000 358 / 2e-120 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Potri.010G248300 [exp] 44 / 4e-05 AT3G56850 216 / 9e-69 ABA-responsive element binding protein 3 (.1) Potri.010G248100 [exp] 44 / 5e-05 AT3G56850 243 / 2e-79 ABA-responsive element binding protein 3 (.1) Potri.008G010800 [exp] 44 / 5e-05 AT3G56850 246 / 3e-80 ABA-responsive element binding protein 3 (.1) Potri.014G028200 [exp] 43 / 9e-05 AT1G45249 317 / 2e-105 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.004G140600 [exp] 43 / 9e-05 AT4G34000 321 / 8e-106 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Potri.002G125400 [exp] 43 / 0.0001 AT1G45249 306 / 4e-100 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.005G243400 [exp] 40 / 0.0006 AT4G35900 117 / 4e-31 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10018857 pacid=23144707 polypeptide=Lus10018857 locus=Lus10018857.g ID=Lus10018857.BGIv1.0 annot-version=v1.0 ATGGCGACGTCGAAGGTGATTTCGTCGTCAAAGGCGATGTCTTCATCGTCGAAACCGAAGGATTCGGATCCATCCGCTTCTTTTTCTTCACAAGCTGCAC GATCGCATCGATTTTCTTCCTCCGATCACCACCGCACCACAACGGCGATGACAGTCGACGGAGTCCTGCGCAGCGTATACTCAGCTCCCCCTCATCCATC ATTGGAGTCCGCACTCCCAACCAATCACTTAGCTCTAATTAACAGCAACGAGAACGGGTTTGCGCCGAGCAAGACTGCGGATGACATTTGGAGGGACATA GTCCCGACAGGGAGGAAAGAATTAAAGGAGGAGGAGCCGGACGAGATGATGACGCTGGAGGATTTCCTGGCGAAGGCCGGAGCAGGGGAGGGGGAGGATG GTGAAGATGACGAGGTAAAGATGACGCCTATGCTATCATTTGATTCGGCTAATGCGATTCAAATGCTGGATAAGGTCGAAGGCTCGATCGTCGGGTTTGG GAACGGTGGTGGGAGAGGGAAGAGAGGTAGAGCTGCGGCGATGGAACAGCAGTTGGATAAGGCTGCTCAGCAGAGGCAGAAGAGGATGATCAAGAATCGG GAGTCAGCTGCTAGGTCCAGAGAGAGGAAGCAGGTGGACTGA
AA sequence Show only first row Show all	>Lus10018857 pacid=23144707 polypeptide=Lus10018857 locus=Lus10018857.g ID=Lus10018857.BGIv1.0 annot-version=v1.0 MATSKVISSSKAMSSSSKPKDSDPSASFSSQAARSHRFSSSDHHRTTTAMTVDGVLRSVYSAPPHPSLESALPTNHLALINSNENGFAPSKTADDIWRDI VPTGRKELKEEEPDEMMTLEDFLAKAGAGEGEDGEDDEVKMTPMLSFDSANAIQMLDKVEGSIVGFGNGGGRGKRGRAAAMEQQLDKAAQQRQKRMIKNR ESAARSRERKQVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10018857 [exp]	0	1
AT5G01950			Leucine-rich repeat protein ki...		Lus10003244 [exp]	1.4	0.9586
AT5G01950			Leucine-rich repeat protein ki...		Lus10035605 [exp]	3.0	0.9375
AT1G04920		ATSPS3F	sucrose phosphate synthase 3F ...		Lus10016657 [exp]	6.3	0.9517
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10032471 [exp]	6.9	0.9349
AT2G35830			unknown protein		Lus10040372 [exp]	7.1	0.9206
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10019601 [exp]	11.5	0.8937
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10032219 [exp]	13.6	0.9262
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Lus10008686 [exp]	18.5	0.9258
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Lus10037085 [exp]	19.6	0.9342
AT3G26935			DHHC-type zinc finger family p...		Lus10022451 [exp]	25.1	0.9190

Compare expression of checked genes

Lus10018857 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.