Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07050 545 / 0 NSN1 nucleostemin-like 1, GTP-binding family protein (.1) AT1G52980 181 / 1e-50 AtNug2 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) AT1G08410 113 / 1e-26 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G27200 103 / 1e-23 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G02790 72 / 2e-13 EMB3129 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018881 [exp] 703 / 0 AT3G07050 706 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10028574 [exp] 693 / 0 AT3G07050 743 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10023835 [exp] 134 / 1e-33 AT1G52980 708 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Lus10021017 [exp] 81 / 3e-16 AT1G52980 591 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Lus10013359 [exp] 75 / 4e-14 AT1G08410 745 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10004103 [exp] 73 / 1e-13 AT1G08410 756 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10006927 [exp] 62 / 2e-10 AT4G02790 462 / 2e-164 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Lus10014672 [exp] 61 / 2e-09 AT4G02790 414 / 8e-142 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Lus10006578 [exp] 49 / 6e-06 AT4G10650 394 / 1e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G241100 [exp] 569 / 0 AT3G07050 667 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Potri.001G402500 [exp] 180 / 2e-50 AT1G52980 811 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Potri.009G017000 [exp] 99 / 1e-21 AT1G08410 755 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G209900 [exp] 66 / 1e-11 AT4G02790 476 / 5e-169 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Potri.012G083100 [exp] 46 / 3e-05 AT4G10650 428 / 4e-150 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08701 [flax] [poplar] GN3L_Grn1 GNL3L/Grn1 putative GTPase CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Lus10018858 pacid=23144692 polypeptide=Lus10018858 locus=Lus10018858.g ID=Lus10018858.BGIv1.0 annot-version=v1.0 ATGCCGAATAAAGCAAGAGTAAGCTATTCCCCCTCACTGGTTCTTCCTATCGCCGTCTCTAATTTAATTTCACTGACATTTTCGTTGGTGTCGACAGAGA GTAAGAGTAAGAGGATCGCCTTGAAGCAGAAGCACAAGGTGATAAAGAAGGTGAAGGAGCACCACAAGAAGAAAGCCAAGGACGCTAAGAAGCTTGTCCG CACCGGCCAGAGGAAGGTCGAGAAGGATCCAGGGATCCCCAATGACTGGCCTTTCAAGGAGCAGGAGCTCAAGGCTCTCGAAGCTCGTCGCGCTCGTGCT CTGGAGGAGATCGAGCAAAAGAAAGCTGACCGCAAGGAACGTGCTCGAAAGAGGAAGTTGGGGATATTAGAGGAAGAAGAGGATGCTGGAGTTGTGCCTG ATGAGAAGAAGGCCAAACAGCAGCATCATGTTGGAGTTGCTCAGAATCGGGATAGTGCAGATAGGGTGTTCTACAAGGAATTGGTCAAGGTGATCGAAGT ATCGGATGTCATTTTGGAAGTTCTTGATGCTAGGGATCCCTTAGGTACACGCTGTGCCGATATGGAGAAGATGGTGATGAAAGCTGGCCCCGAGAAGCAT CTAGTCTTGCTTCTGAATAAAATCGATCTTGTTCCTCGAGAAGCTGTCGAGAAATGGCTCAAGTATCTTAGAGAAGAGCTACCTGCTGTTGCATTCAAGT GCAATACTCAAGAACAGAGGACAAATTTGGGTTGTAAAAAGTCTTCCAAAAAGTCGGCAAAGCCGAGCAAGTTGTTGCAAACTAGTGATTGTCTTGGAGC TGATACTCTGATGAAGTTGCTGAAGAATTACTCTAGAAGTCACGATGTAAGAACGAAGGAGTGTAAGAGTAGTCTCATTAACAGTTTGAAAAGAAGCCAT GTCGCAAATGTAGGTGCTACCCCTGGGTTGACGAGATCGTTGCAAGAGATTCAGTTGGACAAGAACGTTAAATTGGTCGATTGTCCCGGTGTTGTCATGC TGCAATCTCAGGAGAACGATGCGTCTGTTGCTCTTCGAAATTGCAAAAGGATTGAGAAGTTGGACGATCCTATTACTCCAGTGAAGGAAATTCTCAACCG CTGCCCGGAAAGGCTTATGGTTACACTGTACAAGATCCCGAGATTCGAAGGTGCCGATGACTTCTTGCAGAAGTTGGCTACTGTAAGAGGACGGCTGAAA AAGGGTGGTATAGTAGACGTCGATGCTGCTGCGAGAATTGTACTACACGATTGGAATGCCGGGAAGATTCCATACTACACCCTGCCTCCAACAAGGGACC AAGAGGGAGCTTCGGAGGCAAAGATAGTTACTGAGCTAGGCAAGGAGTTCAACATTGACGAAGTCTACAATGGGGAGTCTTCATTTATCGGAAGTCTGAA GTCATTAGTAGACTTGTTGGAATAA
AA sequence Show only first row Show all	>Lus10018858 pacid=23144692 polypeptide=Lus10018858 locus=Lus10018858.g ID=Lus10018858.BGIv1.0 annot-version=v1.0 MPNKARVSYSPSLVLPIAVSNLISLTFSLVSTESKSKRIALKQKHKVIKKVKEHHKKKAKDAKKLVRTGQRKVEKDPGIPNDWPFKEQELKALEARRARA LEEIEQKKADRKERARKRKLGILEEEEDAGVVPDEKKAKQQHHVGVAQNRDSADRVFYKELVKVIEVSDVILEVLDARDPLGTRCADMEKMVMKAGPEKH LVLLLNKIDLVPREAVEKWLKYLREELPAVAFKCNTQEQRTNLGCKKSSKKSAKPSKLLQTSDCLGADTLMKLLKNYSRSHDVRTKECKSSLINSLKRSH VANVGATPGLTRSLQEIQLDKNVKLVDCPGVVMLQSQENDASVALRNCKRIEKLDDPITPVKEILNRCPERLMVTLYKIPRFEGADDFLQKLATVRGRLK KGGIVDVDAAARIVLHDWNAGKIPYYTLPPTRDQEGASEAKIVTELGKEFNIDEVYNGESSFIGSLKSLVDLLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Lus10018858 [exp]	0	1
AT4G19610			nucleotide binding;nucleic aci...		Lus10018277 [exp]	4.5	0.9013
AT4G04940			transducin family protein / WD...		Lus10035842 [exp]	6.5	0.9081
AT5G14520			pescadillo-related (.1)		Lus10002201 [exp]	6.5	0.8806
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10011504 [exp]	8.1	0.8676
AT3G12270		ATPRMT3	ARABIDOPSIS THALIANA PROTEIN A...		Lus10026158 [exp]	8.7	0.8957
AT5G17270			Protein prenylyltransferase su...		Lus10035305 [exp]	9.2	0.8815
AT2G31060		EMB2785	EMBRYO DEFECTIVE 2785, elongat...		Lus10002179 [exp]	10.2	0.8663
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Lus10019735 [exp]	10.7	0.8340
AT1G77550			tubulin-tyrosine ligases;tubul...		Lus10027620 [exp]	11.5	0.8718
AT5G58450			Tetratricopeptide repeat (TPR)...		Lus10042248 [exp]	13.4	0.8915

Compare expression of checked genes

Lus10018858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.