Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11050 374 / 6e-125 Protein kinase superfamily protein (.1) AT2G48010 258 / 2e-80 RKF3 receptor-like kinase in in flowers 3 (.1) AT1G70520 234 / 6e-71 ASG6, CRK2 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) AT3G58690 227 / 1e-70 Protein kinase superfamily protein (.1) AT4G33430 232 / 3e-70 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT4G02630 229 / 3e-70 Protein kinase superfamily protein (.1) AT1G34210 232 / 4e-70 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1) AT1G01540 227 / 6e-70 Protein kinase superfamily protein (.1.2) AT1G71830 229 / 4e-69 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT3G24540 226 / 4e-69 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028551 [exp] 605 / 0 AT1G11050 442 / 2e-148 Protein kinase superfamily protein (.1) Lus10028552 [exp] 511 / 7e-179 AT1G11050 463 / 1e-156 Protein kinase superfamily protein (.1) Lus10018861 [exp] 498 / 2e-173 AT1G11050 465 / 4e-157 Protein kinase superfamily protein (.1) Lus10029714 [exp] 415 / 8e-142 AT1G11050 411 / 6e-137 Protein kinase superfamily protein (.1) Lus10028549 [exp] 398 / 4e-138 AT1G11050 448 / 8e-155 Protein kinase superfamily protein (.1) Lus10018855 [exp] 400 / 1e-137 AT1G11050 473 / 7e-163 Protein kinase superfamily protein (.1) Lus10029711 [exp] 378 / 4e-126 AT1G11050 549 / 0.0 Protein kinase superfamily protein (.1) Lus10001295 [exp] 347 / 8e-114 AT1G11050 770 / 0.0 Protein kinase superfamily protein (.1) Lus10012701 [exp] 340 / 2e-111 AT1G11050 760 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G181800 [exp] 400 / 3e-135 AT1G11050 604 / 0.0 Protein kinase superfamily protein (.1) Potri.017G133000 [exp] 368 / 3e-122 AT1G11050 830 / 0.0 Protein kinase superfamily protein (.1) Potri.017G132800 [exp] 367 / 4e-122 AT1G11050 805 / 0.0 Protein kinase superfamily protein (.1) Potri.004G084900 [exp] 365 / 5e-121 AT1G11050 821 / 0.0 Protein kinase superfamily protein (.1) Potri.017G132250 [exp] 269 / 2e-88 AT1G11050 430 / 2e-148 Protein kinase superfamily protein (.1) Potri.014G136400 [exp] 263 / 9e-82 AT2G48010 794 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.014G136466 [exp] 261 / 1e-80 AT2G48010 792 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.006G128500 [exp] 251 / 4e-80 AT1G16670 353 / 3e-120 Protein kinase superfamily protein (.1) Potri.005G040200 [exp] 254 / 9e-79 AT2G48010 613 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.013G028000 [exp] 251 / 2e-78 AT2G48010 497 / 6e-171 receptor-like kinase in in flowers 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10018860 pacid=23144693 polypeptide=Lus10018860 locus=Lus10018860.g ID=Lus10018860.BGIv1.0 annot-version=v1.0 ATGGTTGAGGTCAGCTTCATCTCCCCCACCTTGCGATTGGTGTTCGAGTTAATAGGAGGTCTGCTTGTTCTGGTGATTGGTATTCTTGTTCTTCTTCTGT ACAGGAAAAAGTTGCAATCTTTCATACGGGAAAAGGGCACGAGAAGTTCGAATCCAAGTGGTATGATCTTGGCCGAAATGGGTTTGATGTGGTTTCGTCT CCATGAGCTGGATCGAGCCACCGGTGGATTTTCCAACAAGAACTTGGTTGGAAAGGGGTCATTCGGGGTTGTGTATAGAGGAAAGCTTGAAAAAGACGGC TCTTTAGTTGCCGTGAAAGAGCTTCTTGAAGTCGAATCATTTGGGAACGAGAAGGAGTTTGCAAATGAAGTTGAGATAGTGAGTAAGATCAAACATAGAA ACCTCCTTTCCCTCAGAGGTTGCTGCTGTGTCGACATAGAGGGCAAGAAAAGGAGGTTTCTCGTTTACAATTTCATGGCGAATGGCAGTGTTGCGGATCA TTTATCGAGCTTCCCACGAAGAGTCCGGTTGTGTTGGGAGCAAAGGATGAACATAATCGTTGATGTCGCGAAGGGGATTGTTTACTTGCATTGTGGTGTG AAGCCAGCGATTTACCACCGCGATATTAAAGCGAGCAACATACTTCTGGATTCGGACATGCGAGCTAAAGTTGCAGACTTTGGTTTAGCAAGACAAGGGA AAGAAGACGGGCTATCTCAGTCTCACATCACAACAAGAGTGGCCGGGACACGTGGTTTTTTAGCACCGGAATACGCAATGTACGGTCACTTAACTCATAA GAGCGATGTCTACAGCTTTGGAGTGTTGATTCTGGAGATCATCACTGCTAAGAGAGTCATAGACATAGACACCTCCTCTAGCAGTTCGTCGGCTGTTCTG ATAACGGACTGGGCGTGGAATCTAGTGAAGTCGGGGAAAGTGGAGGATATCTTCGATGAGACCATGAAGGACGATGAGAAGTATCATGGAGAGACGATGA AAAGGTTTGTTATGGTAGGGATTTTATGTGCGCATGTAGTTGCTGCTCGTAGGCCTACCATTAGTGAAGCTCTTGAGATGCTGGAAGGCGAAGTTGAAGT CCCCGAAATACCTGACCGGCCACTGGCATTGTCTCGCGAGCCGCTGGCTTTAGATGTAATAGACCATATATTGGAGGATTGA
AA sequence Show only first row Show all	>Lus10018860 pacid=23144693 polypeptide=Lus10018860 locus=Lus10018860.g ID=Lus10018860.BGIv1.0 annot-version=v1.0 MVEVSFISPTLRLVFELIGGLLVLVIGILVLLLYRKKLQSFIREKGTRSSNPSGMILAEMGLMWFRLHELDRATGGFSNKNLVGKGSFGVVYRGKLEKDG SLVAVKELLEVESFGNEKEFANEVEIVSKIKHRNLLSLRGCCCVDIEGKKRRFLVYNFMANGSVADHLSSFPRRVRLCWEQRMNIIVDVAKGIVYLHCGV KPAIYHRDIKASNILLDSDMRAKVADFGLARQGKEDGLSQSHITTRVAGTRGFLAPEYAMYGHLTHKSDVYSFGVLILEIITAKRVIDIDTSSSSSSAVL ITDWAWNLVKSGKVEDIFDETMKDDEKYHGETMKRFVMVGILCAHVVAARRPTISEALEMLEGEVEVPEIPDRPLALSREPLALDVIDHILED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11050			Protein kinase superfamily pro...		Lus10018860 [exp]	0	1
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10034045 [exp]	4.6	0.8585
AT4G35410			Clathrin adaptor complex small...		Lus10003641 [exp]	12.6	0.8150
AT4G29860		EMB2757, TAN	TANMEI, EMBRYO DEFECTIVE 2757,...		Lus10009335 [exp]	13.0	0.7955
AT1G02100		SBI1	SUPPRESSOR OF BRI1, Leucine ca...		Lus10028206 [exp]	13.0	0.8349
AT3G01980			NAD(P)-binding Rossmann-fold s...		Lus10041545 [exp]	21.3	0.8354
AT3G55770	LIM	WLIM2b	WLIM2b, GATA type zinc finger ...		Lus10034123 [exp]	24.6	0.8259
AT5G17450		HIPP21	heavy metal associated isopren...		Lus10009115 [exp]	25.3	0.8041
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10040468 [exp]	26.4	0.8308
AT5G42770			Maf-like protein (.1.2)		Lus10002531 [exp]	29.6	0.7706
AT2G25280			unknown protein		Lus10001925 [exp]	32.6	0.8050

Compare expression of checked genes

Lus10018860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.