Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11050 437 / 3e-146 Protein kinase superfamily protein (.1) AT2G48010 302 / 4e-94 RKF3 receptor-like kinase in in flowers 3 (.1) AT1G29730 237 / 1e-67 Leucine-rich repeat transmembrane protein kinase (.1) AT1G34210 229 / 1e-66 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1) AT1G29720 234 / 3e-66 Leucine-rich repeat transmembrane protein kinase (.1) AT3G25560 227 / 8e-66 NIK2 NSP-interacting kinase 2 (.1.2.3) AT1G01540 222 / 2e-65 Protein kinase superfamily protein (.1.2) AT4G34500 221 / 2e-65 Protein kinase superfamily protein (.1) AT1G60800 226 / 3e-65 NIK3 NSP-interacting kinase 3 (.1) AT1G71830 225 / 3e-65 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028552 [exp] 1024 / 0 AT1G11050 463 / 1e-156 Protein kinase superfamily protein (.1) Lus10028551 [exp] 727 / 0 AT1G11050 442 / 2e-148 Protein kinase superfamily protein (.1) Lus10029714 [exp] 504 / 4e-173 AT1G11050 411 / 6e-137 Protein kinase superfamily protein (.1) Lus10018860 [exp] 497 / 5e-173 AT1G11050 384 / 6e-129 Protein kinase superfamily protein (.1) Lus10029711 [exp] 460 / 6e-155 AT1G11050 549 / 0.0 Protein kinase superfamily protein (.1) Lus10018855 [exp] 396 / 8e-133 AT1G11050 473 / 7e-163 Protein kinase superfamily protein (.1) Lus10001295 [exp] 403 / 2e-132 AT1G11050 770 / 0.0 Protein kinase superfamily protein (.1) Lus10028549 [exp] 387 / 8e-131 AT1G11050 448 / 8e-155 Protein kinase superfamily protein (.1) Lus10012701 [exp] 391 / 7e-128 AT1G11050 760 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G181800 [exp] 521 / 6e-179 AT1G11050 604 / 0.0 Protein kinase superfamily protein (.1) Potri.004G084900 [exp] 450 / 7e-151 AT1G11050 821 / 0.0 Protein kinase superfamily protein (.1) Potri.017G133000 [exp] 442 / 6e-148 AT1G11050 830 / 0.0 Protein kinase superfamily protein (.1) Potri.017G132800 [exp] 441 / 2e-147 AT1G11050 805 / 0.0 Protein kinase superfamily protein (.1) Potri.005G040200 [exp] 270 / 7e-82 AT2G48010 613 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.017G132250 [exp] 256 / 2e-80 AT1G11050 430 / 2e-148 Protein kinase superfamily protein (.1) Potri.014G136400 [exp] 252 / 9e-75 AT2G48010 794 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.006G128500 [exp] 241 / 6e-74 AT1G16670 353 / 3e-120 Protein kinase superfamily protein (.1) Potri.014G136466 [exp] 248 / 2e-73 AT2G48010 792 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.013G028000 [exp] 243 / 5e-73 AT2G48010 497 / 6e-171 receptor-like kinase in in flowers 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10018861 pacid=23144719 polypeptide=Lus10018861 locus=Lus10018861.g ID=Lus10018861.BGIv1.0 annot-version=v1.0 ATGAACTTCAGCAGCTCAGCAATGGTTCAGGTCATTCTTCTTCTGTTCATTTTCTGCAGTTTCACTGCAGTTTCTTCTTCTTCATGTCCTGTGAATTTCA CCTACATAGAGAACTACCAGACCCAGCTATCACCATGCCAACAAGACCCGTTTTCGCTACGTTGCTGCTGGTTTCTTCGACCTGTAGTCAGGATAGGATT CGCTCAGTACCTGAAAGAATCTTCGATGTTCTTCTTGCCGAATGAAAGCTACGTACCTTCTTGCTTATCCAGTCTGAGGCAGAAGCTCAATGCTTCTGCT GGTGTAGACCAGTCTGCTGTCGCCTTATGCTTGAAGGACCTGTCAATTTTCGTTGCTGATGGTTCGTCCGGGTGCGATGGAATCGTCACCTTGCAGGATT GGAAGAGAAAGGTTGGTCCAACTCCATCTTTGGACAGTTCCTGTACGGGTGATTTGAACAACCGGGAAATGTGTGCCACCTGCACTATGGCAGGAAGTAG AGTGATAGCTAGTCAAATGCCTGATTCGAGCCGAGATCGAGACAGTAGTACTAGCTGCTCGGTCTTGGCTATCTTGTACGCTGCCGGAATTGCCAATGAG TATGGCCCCTTGGATAACAGGACTTCTTCTTGCTTGCTGTTCGCTCTAAGGGACGGCTTCGAACCTGACCAAAAGCAGCCACTGAAAGGTTCGAGCAAAC GGAGAATGCTCGTGTTGGTGTTCGGGATAACTGGAGGAGCGCTTCTTGTGGTGAGTGTTGTTCTTATTCTTCTGTACAGGAAGAAGTTGCATTGCTGGCA AGAAAAGGTCTTGGATTCAGAACCCGAGAGCAGTTCGAATCCAAGTGATATCATGTTGGCCCAGATGGGTCTACAGTGGTTTCGTCTCCACCAGCTGGAG CGAGCCACGGATGGATTCTCTCCTAGAAACTTGGTCGGTAAGGGAACATTCGGTGTCGTATACAAAGGAAAGCTCGAGGGAGATGGTTCTATAGTTGCAG TCAAGGAGCTTCTCGAAGTCGAATGTTTCGGAAATGACAAGGAATTCGCGAACGAAGTTGAGATAGTGAGCAAGATCAAGCATAGAAATCTCCTTCCCCT CAGAGGCTGCTGTGTCGACATGAAAGCGAAGAGGAGGTTTCTCGTATACGAATTCATGGCGAATGGTAGCGTTGCAGATCATTTGAACGCGGGAAAACGA AGAGTCCGGTTGTGTTGGGAGCAGAGGAAGAACATCATTCTCGATGTGGCGAGGGGGCTAGTTTACTTGCATTGCGGTGTGAAGCCTGCGATTTACCATC GCGACATCAAGTCTAGCAACGTACTTCTGGATCTTGATTTGAGAGCTAAAGTTGGAGACTTTGGTTTGGCGAGACAAGGTAAGGAAGATGGATACTCTCA TATCACCACGAGGGTGGCCGGGACGCACGGGTTTTTAGCACCGGAGTATGCAATGTATGGTCACTTATCGCACAAGAGTGATGTTTATAGCTTCGGAGTG CTGATTCTCGAGATCATGACTGCTCGGAAAGTGATTGATACCTCCTGCAAGGATTCTTCGTCACCGGTTTTGATAACGGATTGGGTGTGGGATTTGGTGA AGTCGGGAAGAGTGGAGGAGGTTTTCGACGAGACTATGAAGGATGATTACTGTCGGGAGGATGGTGACGATGGAGAGATGATGATGATGACGAGGTTTGT TATGGTGGGGGTTCATTGTGCTCATATTGTTGCTGCTCATAGGCCGGACATTAGTGAAGCTTTAAGGATGCTTGAAGGAGGCATTGATGTCCCGAAAACG CCTGAGAGGCCGTTGCTGATGTCTCGGTCTAGTCGTTGGGTTTAG
AA sequence Show only first row Show all	>Lus10018861 pacid=23144719 polypeptide=Lus10018861 locus=Lus10018861.g ID=Lus10018861.BGIv1.0 annot-version=v1.0 MNFSSSAMVQVILLLFIFCSFTAVSSSSCPVNFTYIENYQTQLSPCQQDPFSLRCCWFLRPVVRIGFAQYLKESSMFFLPNESYVPSCLSSLRQKLNASA GVDQSAVALCLKDLSIFVADGSSGCDGIVTLQDWKRKVGPTPSLDSSCTGDLNNREMCATCTMAGSRVIASQMPDSSRDRDSSTSCSVLAILYAAGIANE YGPLDNRTSSCLLFALRDGFEPDQKQPLKGSSKRRMLVLVFGITGGALLVVSVVLILLYRKKLHCWQEKVLDSEPESSSNPSDIMLAQMGLQWFRLHQLE RATDGFSPRNLVGKGTFGVVYKGKLEGDGSIVAVKELLEVECFGNDKEFANEVEIVSKIKHRNLLPLRGCCVDMKAKRRFLVYEFMANGSVADHLNAGKR RVRLCWEQRKNIILDVARGLVYLHCGVKPAIYHRDIKSSNVLLDLDLRAKVGDFGLARQGKEDGYSHITTRVAGTHGFLAPEYAMYGHLSHKSDVYSFGV LILEIMTARKVIDTSCKDSSSPVLITDWVWDLVKSGRVEEVFDETMKDDYCREDGDDGEMMMMTRFVMVGVHCAHIVAAHRPDISEALRMLEGGIDVPKT PERPLLMSRSSRWV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11050			Protein kinase superfamily pro...		Lus10018861 [exp]	0	1
AT5G59590		UGT76E2	UDP-glucosyl transferase 76E2 ...		Lus10040725 [exp]	5.5	0.8123
AT5G54850			unknown protein		Lus10043054 [exp]	5.7	0.8377
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10009502 [exp]	6.2	0.8447
					Lus10041677 [exp]	15.3	0.8262
AT4G33925		SSN2	suppressor of sni1 2, unknown ...		Lus10019878 [exp]	17.3	0.8302
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10019177 [exp]	20.3	0.8156
AT1G04280			P-loop containing nucleoside t...		Lus10021226 [exp]	26.7	0.8165
AT1G08780		PFD4, PDF4, AIP...	PREFOLDIN 4, ABI3-interacting ...		Lus10042533 [exp]	30.3	0.7962
AT1G03590			Protein phosphatase 2C family ...		Lus10031631 [exp]	39.2	0.7895
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10001018 [exp]	43.2	0.7975

Compare expression of checked genes

Lus10018861 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.