Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31180 662 / 0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) AT4G26870 634 / 0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT4G17300 126 / 8e-31 ATNS1, NS1, OVA8 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT5G56680 121 / 6e-29 SYNC1ARATH, SYNC1, EMB2755 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT1G70980 112 / 3e-26 SYNC3, SYNC1 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT3G07420 77 / 9e-15 ATNS2, SYNC2_ARATH, NS2 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) AT3G11710 76 / 3e-14 ATKRS-1 lysyl-tRNA synthetase 1 (.1) AT4G33760 56 / 7e-08 tRNA synthetase class II (D, K and N) family protein (.1) AT1G68420 47 / 8e-07 Class II aaRS and biotin synthetases superfamily protein (.1) AT3G13490 51 / 1e-06 ATKRS-2, OVA5 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028555 [exp] 795 / 0 AT4G31180 606 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10028557 [exp] 264 / 2e-86 AT4G31180 235 / 8e-76 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10028556 [exp] 214 / 1e-66 AT4G31180 73 / 2e-15 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10007470 [exp] 116 / 2e-27 AT4G17300 873 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10032704 [exp] 113 / 2e-26 AT5G56680 907 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10028945 [exp] 105 / 4e-24 AT4G17300 740 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10025874 [exp] 82 / 3e-16 AT3G07420 604 / 0.0 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) Lus10038228 [exp] 78 / 2e-15 AT3G07420 353 / 7e-118 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) Lus10012920 [exp] 78 / 8e-15 AT5G56680 799 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G085400 [exp] 749 / 0 AT4G31180 709 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Potri.007G129800 [exp] 136 / 4e-34 AT4G17300 872 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.017G028800 [exp] 132 / 1e-32 AT4G17300 888 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.006G153900 [exp] 107 / 2e-24 AT5G56680 929 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.018G070000 [exp] 106 / 5e-24 AT5G56680 931 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.002G249700 [exp] 82 / 4e-16 AT3G07420 654 / 0.0 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) Potri.006G166000 [exp] 77 / 8e-15 AT3G11710 936 / 0.0 lysyl-tRNA synthetase 1 (.1) Potri.003G221600 [exp] 71 / 2e-12 AT3G13490 897 / 0.0 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) Potri.009G084300 [exp] 62 / 5e-10 AT4G33760 1004 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1) Potri.001G289001 [exp] 58 / 1e-08 AT4G33760 998 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [flax] [poplar] tRNA_synt_II PF00152 [flax] [poplar] tRNA-synt_2 tRNA synthetases class II (D, K and N) CL0021 [flax] [poplar] OB PF01336 [flax] [poplar] tRNA_anti-codon OB-fold nucleic acid binding domain
Representative CDS sequence Show only first row Show all	>Lus10018862 pacid=23144658 polypeptide=Lus10018862 locus=Lus10018862.g ID=Lus10018862.BGIv1.0 annot-version=v1.0 ATGTCATCATCATCATCCGAACCACAGAATCCGCCGCCGGAGCAAGGCGAGGACGCCAGGGCCGTCAGCAAGAAGGCGGCGAATAAGGAAAAGGCAAAGC TGGCGAAGGAGGCGGCGAAGAAGGCGGCGAAGCTGGCGAAGGAGGCGGAGTCCGCCGCCTTGCAGAACGCCACGTCCTCCCTCTCCCTCAACGACGCTGA GGATCCGCTCGCCGGCAACTACGGCGATGTGCCGCTCAAGGATCTGCAGTCCGAGCATGAAGCCGATGTCAGCTCTCGGACGGAAGTGAGCGAGCTGAAT GAGGAATCGAAGGGCAAGGATGTTGTGTTCAGGGGTCGGGCGCAGACTGTTCGACCCGTAGGGAAGAATATGGCGTTTGTGGTGGTGAGACAGAGATTCT GGACAGTGCAGTGTGTTGTTACTGCTCAGCCTAACCTCGTCAGCCGGCAGATGGTCAAGTTTGTCTCCGGTTTGAGCAGTGAGTCCATTATAGATGTTCA TGGAGTGGTATCAGTGCCTGGTGAGGAAATCAAAGGAGCTACCCAGAAGGTTGAAGTTCAAGTCAAGAAGATCTTTTGCGTTAGCAGAGCTATTCCAGTT CTACCAATGAACATTGGTGATGCCTCTAAGAGTGAGAAGGAGATTGAAAAGGATGGTGGAAACCGTGTTAATCAAGACACACGTTTGAACAATCGAGTTT TGGATCTACGCACACCAGCTAACCAAGCGATATTTCAACTTTCAAGTGAAGTTGAATTTGCGTTCATGGACTTCCTGCGGTCAGAAAAATTCTTGAAGTT CAACACTCCAAAACTGATAGCAGGTAGTAGTGAAGGGGGTGCTGCTGTATTCAGGTTGGACTACAAAGGTCAACCTGCCTGCTTGGCACAGTCACCACAA CTTCACAAACAAATGCTTATTGCTGGAGATTATGGACGAGTGTTTGCGGTTGGTCCTGTTTTCAGAGCAGAAGACTCTTACACTCACAGGCACTTGTGTG AGTTCACGGGCTTTGATGTTGAAATGGAGATAAGAAGCTACTCCGAGGTAATGGACATTGTAGACAGGCTATTTGTCAATATGTTTGACAGATTGAATGA GGAGTGCAAACCACTCCTCGAAGCTATCAACAAGCAATATCCGTTTGAGCCGTTGAAGTACTTGAAGAAGACATTGCGACTGACATTTAAAGAAGGGATT GAAATGCTTGAGGCGGTTGGAGTGAAAGTTGATCCCTATGGAGATCTGAACACTGAAACAGAAAGAAAATTGGGCCAGCTAGTCTTGGAGAGGTACGGCA CTGAGTTCTACATTCTTCACCGCTACCCGTTGGAGGTAAGGCCATTCTACACCATGCCGTGCCCGGATAATCCAAAATACAGTAACTCCTTTGACGTCTT CATTCGAGGTGAGGAGATTATTTCAGGTGCTCAGCGTATCCATGTGCCCGATTTTCTCGAACAACGTGCCAAAGAATGCGGGATAGATGTCAGCACTATC TCTAGCTACATTGATTCTTTCAGATGTGGCATGCCTCCACATGGTGGGTTCGGAGTGGGGTTAGAGCGGGTCATCATGCTCTTCTGCGGCCTGAACAACA TTCGCAAGACCTCGGCGTTCCCTCGTGACCCTCGTAGGCTTACACCATGA
AA sequence Show only first row Show all	>Lus10018862 pacid=23144658 polypeptide=Lus10018862 locus=Lus10018862.g ID=Lus10018862.BGIv1.0 annot-version=v1.0 MSSSSSEPQNPPPEQGEDARAVSKKAANKEKAKLAKEAAKKAAKLAKEAESAALQNATSSLSLNDAEDPLAGNYGDVPLKDLQSEHEADVSSRTEVSELN EESKGKDVVFRGRAQTVRPVGKNMAFVVVRQRFWTVQCVVTAQPNLVSRQMVKFVSGLSSESIIDVHGVVSVPGEEIKGATQKVEVQVKKIFCVSRAIPV LPMNIGDASKSEKEIEKDGGNRVNQDTRLNNRVLDLRTPANQAIFQLSSEVEFAFMDFLRSEKFLKFNTPKLIAGSSEGGAAVFRLDYKGQPACLAQSPQ LHKQMLIAGDYGRVFAVGPVFRAEDSYTHRHLCEFTGFDVEMEIRSYSEVMDIVDRLFVNMFDRLNEECKPLLEAINKQYPFEPLKYLKKTLRLTFKEGI EMLEAVGVKVDPYGDLNTETERKLGQLVLERYGTEFYILHRYPLEVRPFYTMPCPDNPKYSNSFDVFIRGEEIISGAQRIHVPDFLEQRAKECGIDVSTI SSYIDSFRCGMPPHGGFGVGLERVIMLFCGLNNIRKTSAFPRDPRRLTP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31180			Class II aminoacyl-tRNA and bi...		Lus10018862 [exp]	0	1
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Lus10010156 [exp]	4.5	0.7541
AT3G26750			unknown protein		Lus10021459 [exp]	11.7	0.7068
AT4G30000			Dihydropterin pyrophosphokinas...		Lus10037062 [exp]	12.7	0.6685
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10019024 [exp]	17.2	0.7481
AT3G25800		PP2AA2, PR65, P...	protein phosphatase 2A subuni...		Lus10021695 [exp]	17.7	0.6982
AT1G10840		TIF3H1	translation initiation factor ...		Lus10007054 [exp]	19.6	0.7108
AT2G16950		ATTRN1	transportin 1 (.1.2)		Lus10025083 [exp]	23.0	0.7175
AT3G10530			Transducin/WD40 repeat-like su...		Lus10035740 [exp]	29.0	0.7121
AT1G31430			Pentatricopeptide repeat (PPR-...		Lus10002288 [exp]	29.7	0.6974
AT1G72550			tRNA synthetase beta subunit f...		Lus10009382 [exp]	42.6	0.6804

Compare expression of checked genes

Lus10018862 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.