Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44950 62 / 8e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G16930 59 / 6e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G03360 55 / 2e-08 F-box/RNI-like superfamily protein (.1) AT3G42770 55 / 2e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G13570 54 / 2e-08 F-box/RNI-like superfamily protein (.1) AT5G53840 54 / 3e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G78730 54 / 5e-08 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1) AT1G78750 53 / 6e-08 F-box/RNI-like superfamily protein (.1) AT1G66310 52 / 2e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G78760 50 / 6e-07 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028722 [exp] 279 / 2e-91 AT2G42730 76 / 1e-14 F-box family protein (.1.2) Lus10028558 [exp] 187 / 2e-60 AT3G51530 56 / 4e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10011268 [exp] 174 / 2e-54 AT5G41630 52 / 7e-08 F-box/RNI-like superfamily protein (.1) Lus10003089 [exp] 173 / 2e-53 AT5G53840 54 / 3e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10005646 [exp] 118 / 3e-32 AT1G80960 57 / 1e-09 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Lus10028602 [exp] 114 / 8e-30 AT1G80960 50 / 1e-06 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Lus10037151 [exp] 103 / 1e-26 AT5G02700 60 / 2e-10 F-box/RNI-like superfamily protein (.1) Lus10028721 [exp] 99 / 1e-25 AT5G53840 56 / 5e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10005091 [exp] 103 / 3e-25 AT1G69010 149 / 5e-41 BES1-interacting Myc-like protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G107600 [exp] 58 / 1e-09 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.011G024300 [exp] 56 / 7e-09 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.004G224975 [exp] 53 / 7e-08 AT5G53840 48 / 4e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.010G134200 [exp] 50 / 5e-07 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.011G098700 [exp] 49 / 1e-06 AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Potri.012G099400 [exp] 48 / 4e-06 AT5G44950 77 / 1e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.001G322900 [exp] 47 / 6e-06 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.015G011200 [exp] 45 / 2e-05 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.004G034500 [exp] 45 / 4e-05 AT1G61330 175 / 3e-49 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G136200 [exp] 44 / 8e-05 AT1G56400 215 / 2e-64 F-box family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018863 pacid=23144722 polypeptide=Lus10018863 locus=Lus10018863.g ID=Lus10018863.BGIv1.0 annot-version=v1.0 ATGGCGGATTTGGACTCTGTTTCTACTGGAAAGGAAGGAGAAGAAGTTGAATTGGATCGGATTGGTGAGTTGCCTGATGAACTTCTCATCGACATCGTAT TTCGTTTGGATCTGGCGGAAGCCATCAGAGCTTCAGTCCTCTCAAGTAGGTGGATAAACTTGTGGAAATTAGCCGTTTCAGTGCTCGACTTTGATGCCTC GGAGGAGTTGCTAGCTATTGACAAGCGGATCCGTCTCGATTTCAAAAGAATAATTGATGAGAAGAGGCGCGGGTACATGAATTGGGTGAACGGGGTTGTA ACCCAGATGCAACAGAGTTGCTCACGCCTAAGCAAGTTTCGGGTTTCGTTTAACTTGACGAATGAATGCAATTCGGAAGGGGATATCGATAGATGGCTCG AGTTTGCAATATCAAAGAGGGTGGAGTCTCTCCACCTAGCCTTAGAGGTGGTTCCTGAGATCGTTGCGCTTGAGATGTGTCGATGTTCGGGGGAGCTTAT TGAACATTTCATTGCCAATTTCCCCCTGCTTGAAGAGTTAGCTGTGATAGCGTCGAATCACCTTACAAAGCTCAAGGTTGCAAGTTCTCCATTGAAGCAC TTGGAAGTAAGATTTTCCAAATATTTGGCATCTATGGAGATTGGTAACGCCCCTCGCCTTGAGCAGTTGATACTCGATTATGTGCATTGTTTGAAAGAAA TCCAAGCGGGTAATTGCCCGTCCCTTGTGGATATCACCTTAGGTTCCACGAGAATTTTCCATGAAACGTTTAAAGCCTTTTGA
AA sequence Show only first row Show all	>Lus10018863 pacid=23144722 polypeptide=Lus10018863 locus=Lus10018863.g ID=Lus10018863.BGIv1.0 annot-version=v1.0 MADLDSVSTGKEGEEVELDRIGELPDELLIDIVFRLDLAEAIRASVLSSRWINLWKLAVSVLDFDASEELLAIDKRIRLDFKRIIDEKRRGYMNWVNGVV TQMQQSCSRLSKFRVSFNLTNECNSEGDIDRWLEFAISKRVESLHLALEVVPEIVALEMCRCSGELIEHFIANFPLLEELAVIASNHLTKLKVASSPLKH LEVRFSKYLASMEIGNAPRLEQLILDYVHCLKEIQAGNCPSLVDITLGSTRIFHETFKAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44950			F-box/RNI-like/FBD-like domain...		Lus10018863 [exp]	0	1
AT2G32360			Ubiquitin-like superfamily pro...		Lus10027183 [exp]	4.0	0.7281
AT5G04347			Plant self-incompatibility pro...		Lus10029375 [exp]	4.2	0.8221
AT5G48540			receptor-like protein kinase-r...		Lus10030777 [exp]	6.0	0.8221
					Lus10012269 [exp]	7.3	0.8221
AT5G56670			Ribosomal protein S30 family p...		Lus10019054 [exp]	8.5	0.8221
AT1G21000			PLATZ transcription factor fam...		Lus10005350 [exp]	9.5	0.8221
					Lus10035508 [exp]	10.4	0.8221
AT3G18040		ATMPK9	MAP kinase 9 (.1.2)		Lus10038956 [exp]	11.2	0.8221
AT5G52605			Defensin-like (DEFL) family pr...		Lus10031095 [exp]	12.0	0.8221
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10006147 [exp]	12.7	0.8193

Compare expression of checked genes

Lus10018863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.