Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21651 561 / 0 zinc ion binding (.1) AT1G21650 564 / 5e-180 SECA2 Preprotein translocase SecA family protein (.1.2.3) AT1G24530 79 / 5e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18860 70 / 5e-12 transducin family protein / WD-40 repeat family protein (.1.2) AT1G49040 66 / 1e-10 SCD1 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) AT1G49450 64 / 3e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 62 / 8e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT2G26490 61 / 2e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 59 / 6e-09 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G15980 57 / 5e-08 Coatomer, beta' subunit (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028560 [exp] 1234 / 0 AT1G21650 687 / 0.0 Preprotein translocase SecA family protein (.1.2.3) Lus10033092 [exp] 66 / 9e-11 AT1G52360 1481 / 0.0 Coatomer, beta' subunit (.1.2) Lus10039568 [exp] 64 / 2e-10 AT3G51930 498 / 6e-176 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024180 [exp] 61 / 3e-09 AT3G51930 494 / 2e-174 Transducin/WD40 repeat-like superfamily protein (.1) Lus10040490 [exp] 61 / 6e-09 AT3G18860 1103 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10023563 [exp] 59 / 1e-08 AT1G49040 1743 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Lus10003487 [exp] 58 / 1e-08 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10034117 [exp] 58 / 2e-08 AT5G50120 391 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1) Lus10023255 [exp] 58 / 2e-08 AT4G21130 517 / 0.0 EMBRYO DEFECTIVE 2271, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G066500 [exp] 767 / 0 AT1G21651 716 / 0.0 zinc ion binding (.1) Potri.006G239600 [exp] 74 / 2e-13 AT3G50390 280 / 4e-89 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G050900 [exp] 73 / 3e-13 AT1G24530 483 / 5e-170 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G202700 [exp] 71 / 1e-12 AT3G51930 531 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 66 / 4e-11 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G022900 [exp] 65 / 8e-11 AT3G51930 523 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G150700 [exp] 66 / 1e-10 AT3G18860 1099 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.003G051100 [exp] 64 / 3e-10 AT2G26490 223 / 2e-67 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G076000 [exp] 62 / 8e-10 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1) Potri.T125104 [exp] 62 / 1e-09 AT3G18860 1114 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10018865 pacid=23144674 polypeptide=Lus10018865 locus=Lus10018865.g ID=Lus10018865.BGIv1.0 annot-version=v1.0 ATGTCCGGTATGCCTCCAATCCTACGACGGCGACGAAACACTTCCCCGAGTACTCCCTTGCGGCCACACAGCCTGCGAATCGTGTCTCAAGAGCTTACCG GAAAGGTACCATCTCACCGTCCGTTGCCCCGCCTGTACTCCATTTGGCAAATCCCCATCACCCTTAGGTCATCTTTAGGTCCCTCTTCCCTCCCCAAGAA CATCGATCTCCTCAGACTGATCCCCGAAACTGCTAACAAAGATCGAAGTTGCTCGAAAATCGGTGTCAATCTCCTCGAAAGCAGCTTTCTTCCTCGTCTG TGGTCGGACGAGTTCTACTCCACGTGGCGGAAGTGGATTCTCCCACACGACGCCGTTTCGGTGGACGATGGGGAGGAAAGAAGAAGACTTTTCATGGTTG GTGATACTGGGGAAGAAAAAGGCACTGTCTTTAAGTTAAGCTATGTAGCCAAGATCATGAATTGTTTGTATGAGATGAGTGAAGAGAAGAGAAAGGAATT GGGGTTGATCCTGAAGATTGGTGAGAAAAGGAGTGGTAGGGTTTGTCAAGTTCATGGATTGTGGAGTGATCTTGATGATGGTGCTTTATATTGTGTGTCT GAGAGGATGAATAATGTGATGAGCTTAGGTGAAATGTCTGGTTTTTCCATGGTGGTGGGGATGGAGATTTGTGAAGCAGTGATGAGTCTGCATCTTGAAG GTGTAATTGCAGGTGGATTAGGGCTCGATTGTTTCATGGTTGATGATTTCGGACATGTTAGTTTGAGTTTGAATCAGGTTCTAGCTCTTGGTGAAGCCAG TTGGAAAGATGTTTCAGGATTTGTTGGTAATAGTAGAGAGTTGGGAGCCTTGGTTGGTGAGTTTCTTAGACGAGATGAGTGTTTGAGCCCCGAGGCATTG TTCGAGATCTTGAATAAGGGGGACTCGAGCTTGGTTTCTTGTATTGGATATAGGTCAGATGTTTGGTCATTGGCTTGGATATTCGTTAGAATTCTTGTTG GGGAACAGTTTACTGAAGAAATGGCTGGTTGCTTGGATCGCTTCGTTTTGGAAACAAGTGAAAAGGGCGGTTTAGAATTTGAAGGTCTTTATAACAGGTT GATGGAGAAGGCAAGTCATTTACTTGAAAGCAAATTAGGCGAGGAGCATCAGTCATTAAAGCAGCTTCTATGTGAATGTTTGAACTTTCAGATAGAGAAG CGACTGAGTGTGGTTGACATGTGGAAATGCATTCGAGAAATGATCGTAGGAGTCAAGTTTGATGCTGGTCCTAGATTGGATAAGCTTGTTTGTAATCATG GAGCTACAGGAAAGTGCCTGATTCTTGGAGAAATGTGTCGCGTGACATCAAAGCGGAAATCCGAAATGGAAAATGATGATGAATTACGGGAGGAAGAAGA AAATTTTGATGATTTTCAGGAGACCAGTACGAATGCTGTTGAGGGATTGGTGGAAGGTAAAGTGAAGTGCAAAGATTTGCAAGGCCATCTCGATTGCGTC ACTGGATTCGCTATCGGAGGTGGATTTCTATTTAGCTCATCGTTTGATAAGTCAGTTTGTGTATGGTCTCTACAGGATTTCTCTCATGTTCACACATTCA AAGGCCACGAGCATAAGGTCATGGCGGTAATCTACACCGAGGAATTCCAAGAACCATCATGCATAAGTGCTGATAGTGGAGGCGGCATATATCTCTGGAG CATTCAGAACCCTCTCGGCCAGGAACCGTCCAGGAAATGGTACGAGCAAAAGGACTGGCGGTATAGTGGTATCCATGCTTTAGCCACTGCAGACAATGGA TATCTCTATACGGGCAGTGGAGATCGGTTGGTAAAGGCTTGGTCTTTACAGGATGGTACTCTGTCATGTGCTATGGCTGGTCATAAATCGGTGGTTTCGA CGTTATCAGCTTGTAACGGAGTTCTCTACAGCGGTAGCTGGGACGGGACTGTTCGATTATGGAGTCTTAGTGATCATAGTCTTCTCACAGTGTTGGGCGA CGATAATATGCCGAGAGGAACTTTGACTTCTGTCCTGTCTGTCATTGCTGATAAGAACATCGTTGTTGCGACTCACGAGAATGGCCATTTAAAGGTTTGG AAGAACGATCAGTTTATGAAAGCAGCAGAAATACATAACGGCGCTATTTTCTCTAGCAGCATGGAAGGCCAGTGGCTGTATACCGGAGGCTGGGACAAGA CTGTTCATGTTCAGGAAATCTTGTGGGATGAGCTCGAAGTAGACATCAGACTCATCGGATCGATCCCAAGTAGTTCTGTCGTAACTGCTTTGTTGTACTG GCAAGGGAAGCTTTTCATTGGCCATGGTGATCGCACGATCAAGAATTGGCAACATCAGCTGAAACATGTCAAGATCATCGATCGAGATGTCGACCAAGAT GTTAAGAAGGACGATGACGAAGAAGAAGTAGACTGTGACGAAGAATGGGTGATCATTATGAAGGAGATTGCGATTGTGTTGCTTGGAAACCGGAGACGAG TTTCCTTCGAGTTAACTTGGTACTAA
AA sequence Show only first row Show all	>Lus10018865 pacid=23144674 polypeptide=Lus10018865 locus=Lus10018865.g ID=Lus10018865.BGIv1.0 annot-version=v1.0 MSGMPPILRRRRNTSPSTPLRPHSLRIVSQELTGKVPSHRPLPRLYSIWQIPITLRSSLGPSSLPKNIDLLRLIPETANKDRSCSKIGVNLLESSFLPRL WSDEFYSTWRKWILPHDAVSVDDGEERRRLFMVGDTGEEKGTVFKLSYVAKIMNCLYEMSEEKRKELGLILKIGEKRSGRVCQVHGLWSDLDDGALYCVS ERMNNVMSLGEMSGFSMVVGMEICEAVMSLHLEGVIAGGLGLDCFMVDDFGHVSLSLNQVLALGEASWKDVSGFVGNSRELGALVGEFLRRDECLSPEAL FEILNKGDSSLVSCIGYRSDVWSLAWIFVRILVGEQFTEEMAGCLDRFVLETSEKGGLEFEGLYNRLMEKASHLLESKLGEEHQSLKQLLCECLNFQIEK RLSVVDMWKCIREMIVGVKFDAGPRLDKLVCNHGATGKCLILGEMCRVTSKRKSEMENDDELREEEENFDDFQETSTNAVEGLVEGKVKCKDLQGHLDCV TGFAIGGGFLFSSSFDKSVCVWSLQDFSHVHTFKGHEHKVMAVIYTEEFQEPSCISADSGGGIYLWSIQNPLGQEPSRKWYEQKDWRYSGIHALATADNG YLYTGSGDRLVKAWSLQDGTLSCAMAGHKSVVSTLSACNGVLYSGSWDGTVRLWSLSDHSLLTVLGDDNMPRGTLTSVLSVIADKNIVVATHENGHLKVW KNDQFMKAAEIHNGAIFSSSMEGQWLYTGGWDKTVHVQEILWDELEVDIRLIGSIPSSSVVTALLYWQGKLFIGHGDRTIKNWQHQLKHVKIIDRDVDQD VKKDDDEEEVDCDEEWVIIMKEIAIVLLGNRRRVSFELTWY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21650		SECA2	Preprotein translocase SecA fa...		Lus10018865 [exp]	0	1
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10001862 [exp]	1.7	0.8726
AT1G43130		LCV2	like COV 2 (.1)		Lus10018869 [exp]	7.7	0.8852
AT5G57580			Calmodulin-binding protein (.1...		Lus10001436 [exp]	15.4	0.8774
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10008582 [exp]	17.0	0.8726
AT5G43200			Zinc finger, C3HC4 type (RING ...		Lus10019685 [exp]	20.8	0.8522
AT5G15080			Protein kinase superfamily pro...		Lus10030668 [exp]	21.5	0.8343
AT1G64300			Protein kinase family protein ...		Lus10032357 [exp]	21.9	0.8389
AT3G46540			ENTH/VHS family protein (.1)		Lus10040824 [exp]	30.7	0.8687
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10035194 [exp]	40.6	0.8509
AT5G53850			haloacid dehalogenase-like hyd...		Lus10015967 [exp]	44.8	0.8325

Compare expression of checked genes

Lus10018865 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.