Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21600 340 / 5e-117 PTAC6 plastid transcriptionally active 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028562 [exp] 506 / 0 AT1G21600 369 / 4e-128 plastid transcriptionally active 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G078900 [exp] 357 / 1e-123 AT1G21600 399 / 5e-140 plastid transcriptionally active 6 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018866 pacid=23144756 polypeptide=Lus10018866 locus=Lus10018866.g ID=Lus10018866.BGIv1.0 annot-version=v1.0 ATGGCCGTCGCAGCCACTACTCTCAACTTCTTCGCCCCACCGCCTTCCATTTCGAGCTTCTACACAACAAAATCCAGCTCTGCGTCGTTCCCTTCCTCCC GATTCAACTCCACCAGCAGTGACTACTTTCGCTCAGCTCAGGGAACTCGGAGGACATTCGTAGCGAAGGCGGTCGGCAGCGATGCAGCCGATAGTGCCGA GGATTTCTTCATAGAGGATGAGGTCGAGGAAGTGGACGAGGACTACGACTTGGAGTACGAACCTTCTAAGGAGGAAGATGACACCGCGATAGTGTACGGC AGGAGTTTCATGTCGACTCCAGGATGGAACTCGGAGAAGATTGTCGATTACAGGATCAACGAGGAGGATTTCCACAAGATCAGCTTGCTGGAATGCGATT TCTTCATCAGGAGGCCGCCGGATCCTGATCGTGATGTTTATGATTTCAGGGAGATGTATGTTACTCCGCCGGATACTGATATCTATGCTATTCCCAGAGT TCTTGCTCCGTTGCCGGGAAAGCTTATACGATGTGCAAAGACAAATTACGGATGCTACAACGTGACAGAACCACCCGTTGATGCACTCCGAGACCCGCTA TATAAAACTGATAGGGAGGTTTGGAAGGTTTTCTTGACCAAGCACTACAAGAACCGCAGGCTGGGAGATCCCGAGTTCATGTTGGACTTTGAGGAAATCT ATGTCTTGGACTCCAAAACAAAGTCCATAACCAGAGGAAAAGTAGTGGTGACAGTTCGTGACGGGAGGAATCGAGATAGAAAGAACGACTTGCTTGTAAT ACGAGATAATGGAAGTTCCTTCAAAATTATCGATTCGGCTCAAAGAGATGACCCCACGACTGTAATCGAGAAGGAGGAATGGACGAAAGGCCGACAAGAC ATGGAGAGACACCTCAGCAAGCTGCGCGACTTCGAAGTTTCGAACTGGCTCTAA
AA sequence Show only first row Show all	>Lus10018866 pacid=23144756 polypeptide=Lus10018866 locus=Lus10018866.g ID=Lus10018866.BGIv1.0 annot-version=v1.0 MAVAATTLNFFAPPPSISSFYTTKSSSASFPSSRFNSTSSDYFRSAQGTRRTFVAKAVGSDAADSAEDFFIEDEVEEVDEDYDLEYEPSKEEDDTAIVYG RSFMSTPGWNSEKIVDYRINEEDFHKISLLECDFFIRRPPDPDRDVYDFREMYVTPPDTDIYAIPRVLAPLPGKLIRCAKTNYGCYNVTEPPVDALRDPL YKTDREVWKVFLTKHYKNRRLGDPEFMLDFEEIYVLDSKTKSITRGKVVVTVRDGRNRDRKNDLLVIRDNGSSFKIIDSAQRDDPTTVIEKEEWTKGRQD MERHLSKLRDFEVSNWL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21600		PTAC6	plastid transcriptionally acti...		Lus10018866 [exp]	0	1
AT1G21600		PTAC6	plastid transcriptionally acti...		Lus10028562 [exp]	1.0	0.9415
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10032688 [exp]	2.0	0.9372
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10007016 [exp]	3.9	0.9364
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10012055 [exp]	4.5	0.9315
AT4G27990		ATYLMG1-2	YGGT family protein (.1)		Lus10020405 [exp]	4.9	0.9282
AT1G24610			Rubisco methyltransferase fami...		Lus10021783 [exp]	8.7	0.9285
AT1G66430			pfkB-like carbohydrate kinase ...		Lus10028517 [exp]	10.4	0.9027
AT4G01050		TROL	thylakoid rhodanese-like (.1)		Lus10005947 [exp]	10.6	0.9118
AT1G66430			pfkB-like carbohydrate kinase ...		Lus10009126 [exp]	11.1	0.8896
AT3G57800	bHLH	bHLH060	basic helix-loop-helix (bHLH) ...		Lus10042349 [exp]	12.0	0.9016

Compare expression of checked genes

Lus10018866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.