Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21790 1348 / 0 ATRNR1, RNR1, CLS8, RIBONUCLEOTIDEREDUCTASE,REDUCTASEPROTEINR1, R1, RIBONUCLEOTIDEREDUCTASE, REDUCT CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033526 [exp] 1335 / 0 AT2G21790 1514 / 0.0 CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1) Lus10020845 [exp] 1333 / 0 AT2G21790 1503 / 0.0 CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G194900 [exp] 1367 / 0 AT2G21790 1421 / 0.0 CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1) Potri.007G076700 [exp] 1343 / 0 AT2G21790 1448 / 0.0 CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1) Potri.005G087300 [exp] 1343 / 0 AT2G21790 1450 / 0.0 CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0339 [flax] [poplar] PFL-like PF02867 [flax] [poplar] Ribonuc_red_lgC Ribonucleotide reductase, barrel domain CL0339 [flax] [poplar] PF03477 [flax] [poplar] ATP-cone ATP cone domain CL0339 [flax] [poplar] PF00317 [flax] [poplar] Ribonuc_red_lgN Ribonucleotide reductase, all-alpha domain
Representative CDS sequence Show only first row Show all	>Lus10018867 pacid=23144685 polypeptide=Lus10018867 locus=Lus10018867.g ID=Lus10018867.BGIv1.0 annot-version=v1.0 ATGCACGTCATCAAGCGAGACGGGAGGCGGGAGCAGGTCCAGTTCGACAAGATCACCGCTCGGCTAGAGAATCTGGCGGTAGGTCTGAGCCGCGAGCACT GTGACCCAGTGCTGGTGTCGCAGAAGGTCTGCGCTGGCGTCTACGGCGGCGTCACCACCGATCAGCTTGATCAGTTGGCCGCCGAGACTGCTGCCTCCAT GACTACTAATCACCCTCACTATGCTTCGTTGGCTGCAAGGATTGCTGTTTCGAATCTGCATAAGAATACCAAGGAATCTTTCTCTGAGACGATCAAGCTG ATGTACAATTACGTTGATAAGAGATCAGGACAGAAAGCCTCTCTTGTTGCGAACGATGTTTATGAAATCATCATGGAGCATGCTGCGCTCCTGGATGAAG CGATCATCTATGACAGAGATTTTGAGTATGATTATTTTGGGTTCAAGACACTCGAGAGATCTTACCTTCTGAAGGTTGATGGGAAAATTGTCGAAAGGCC TCAGCACATGCTGATGAGGGTTGCAGTTGGCATCCACAAAAATGACATGGACTCTGTGCTTCACACTTATACTTCGATGTCCCAGGGTTGGTTCACTCAT GCTACCCCTACCCTTTTTAACGCAGGAACCCCAAAGCCTCAAATGAGCAGTTGCTTTCTTGTGTGTATGAAAGATGACAGCATTGATGGTATATTTGAGA CTCTAAAGGAGTGTGCTGTCATTAGTAAGTCAGCTGGCGGAGTTGGTCTCTCAACAAGTAACATTCGTGCCACGGGCAGTTACATCCGTGATACAAATGG AACATCAAATGGAATTATTCCTATGCTTCGAGTGTTCAATGATACTGCTCGTTATGTTGATCAAGGTGGTGGCAAGCGAAAGGGTGCTTTTGCTGTATAT CTGGAGCCATGGCATGCCGACATTTTTGAGTTTTTAGATCTCAAGAAAAACCATGGGAAGGAGGAAAATCGGGCAAGAGATTTGTTCTATGCTCTTTGGA TCCCAGATCTTTTCATGGAAAGAGTAAGAAGCAACAGCAAGTGGTCTTTGTTCTGCCCTAGCGAGGCTCCTGGCTTGGCTGACACTTGGGGTGAAGAGTT TGAAAGACTGTATAGTATTTATGAAAATGAGGGTAGGGCAAAGAAGGTTGTTTCTGCTCAGAAACTTTGGAATGAGGTCTTAATTTCCCAAGTTGAAACT GGAACGCCTTACATGCTTTTCAAGGACTCTTGCAACAGAAAAAGCAACCAGCAAAATTTGGGGACAATAAAGTCCTCAAACCTGTGCACTGAAATTATTG AATACTCAAGTCCGACTGAGACAGCTGTTTGCAATCTAGCATCGATAGCACTGCCCCGATTTGTGAGGGTACAGGGGGTTCCTATTGAATTACACACATC CAAGTTAACCGGAACTAGAGATTCAAAGAACCGATACTTTGACTTTGATAAATTAGCTGAGGTTACTGTAACAGTTACTAAAAACCTTAACAAAGTCATT GATGTCAATCACTACCCAGTTGATACTGCAAGGAGGTCAAATTTAAGGCATCGGCCCATTGGCATAGGCATTCAAGGTCTTGCTGATACCTTTATCCTAC TTGGCATGCCATTTGATTCACCAGAGGCCCGGCAATTAAACAAGGACATAGCTGAGACGATCTATTACCACGCACTGAAAGCTTCTTCGGAATTGGCTGC AAAAGACGGTCCGTACGAGACATATTATGGGAGCCCTGGAAGCAAAGGAGTTCTTCAAATGGATATGTGGGGAGTAACTCCATCACAGAGGTGGGACTGG AATGCTCTAAGGGAGAAGATTACCATTAATGGACTTAGGAACTCCCTTCTCGTAGCACCGATGCCAACAGCTTCGACAAGCCAGATTCTGGGAAACAACG AGTGCTTCGAACCTTATACTTCCAACATCTATAGCCGTAGAGTGCTAAGTGGTGAATTTGTGGTGGTGAACAAACACCTTCTGCAAGACCTAACCGAGAT GGGACTCTGGTCACCTGCACTGAAGAACAAGATAATCAACTATAACGGTTCAGTTCAGAAAGTGCCTGAAATTCCTGATCAGCTAAAAGCTATCTACAGG ACTGTGTGGGAAATCAAGCAGAAATCAGTGGTGGAGATGGCTATAGATCGTGGTTGTTACATCGATCAGAGTCAGAGCCTCAACATTCACTTCGAAGAAC CTACTCTTGGGAAGCTTAATGGTCTCCATTTCTTTGCTTGGCAAAAGGGACTGAAAACAGGGATGTACTATCTGAGAACAAGAGCAGCAGCAGATGCTAT AAAATTCACAGTAGACACTTCAGCTATTAAAGCTGATGAACAAGAGGCTTGTTCACTTCTGAATCGAGAAGACTGCACTTCCTGTGGAAGTTGA
AA sequence Show only first row Show all	>Lus10018867 pacid=23144685 polypeptide=Lus10018867 locus=Lus10018867.g ID=Lus10018867.BGIv1.0 annot-version=v1.0 MHVIKRDGRREQVQFDKITARLENLAVGLSREHCDPVLVSQKVCAGVYGGVTTDQLDQLAAETAASMTTNHPHYASLAARIAVSNLHKNTKESFSETIKL MYNYVDKRSGQKASLVANDVYEIIMEHAALLDEAIIYDRDFEYDYFGFKTLERSYLLKVDGKIVERPQHMLMRVAVGIHKNDMDSVLHTYTSMSQGWFTH ATPTLFNAGTPKPQMSSCFLVCMKDDSIDGIFETLKECAVISKSAGGVGLSTSNIRATGSYIRDTNGTSNGIIPMLRVFNDTARYVDQGGGKRKGAFAVY LEPWHADIFEFLDLKKNHGKEENRARDLFYALWIPDLFMERVRSNSKWSLFCPSEAPGLADTWGEEFERLYSIYENEGRAKKVVSAQKLWNEVLISQVET GTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIIEYSSPTETAVCNLASIALPRFVRVQGVPIELHTSKLTGTRDSKNRYFDFDKLAEVTVTVTKNLNKVI DVNHYPVDTARRSNLRHRPIGIGIQGLADTFILLGMPFDSPEARQLNKDIAETIYYHALKASSELAAKDGPYETYYGSPGSKGVLQMDMWGVTPSQRWDW NALREKITINGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLQDLTEMGLWSPALKNKIINYNGSVQKVPEIPDQLKAIYR TVWEIKQKSVVEMAIDRGCYIDQSQSLNIHFEEPTLGKLNGLHFFAWQKGLKTGMYYLRTRAAADAIKFTVDTSAIKADEQEACSLLNREDCTSCGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21790		ATRNR1, RNR1, C...	CRINKLY LEAVES 8, RIBONUCLEOTI...		Lus10018867 [exp]	0	1
					Lus10017557 [exp]	8.1	0.7891
					Lus10027664 [exp]	12.4	0.7732
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Lus10021707 [exp]	14.9	0.7712
AT5G26594		ARR24	response regulator 24 (.1)		Lus10005407 [exp]	18.7	0.7547
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10010373 [exp]	22.4	0.7536
AT2G39210			Major facilitator superfamily ...		Lus10021512 [exp]	25.8	0.7461
AT5G02320	MYB	MYB3R-5, ATMYB3...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10008010 [exp]	27.7	0.7353
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Lus10022796 [exp]	29.1	0.7227
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10012571 [exp]	31.5	0.7293
AT3G23880			F-box and associated interacti...		Lus10010910 [exp]	33.4	0.7211

Compare expression of checked genes

Lus10018867 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.