Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43130 363 / 2e-127 LCV2 like COV 2 (.1) AT2G20120 309 / 7e-106 COV1 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) AT2G20130 307 / 3e-105 LCV1 like COV 1 (.1) AT2G18460 290 / 3e-98 LCV3 like COV 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028563 [exp] 457 / 3e-164 AT1G43130 405 / 1e-144 like COV 2 (.1) Lus10028564 [exp] 360 / 6e-126 AT1G43130 405 / 2e-144 like COV 2 (.1) Lus10018869 [exp] 356 / 3e-124 AT1G43130 408 / 1e-145 like COV 2 (.1) Lus10011099 [exp] 315 / 4e-108 AT2G20120 392 / 4e-139 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) Lus10014314 [exp] 286 / 2e-95 AT2G18460 379 / 3e-132 like COV 3 (.1) Lus10026023 [exp] 284 / 9e-95 AT2G18460 378 / 5e-132 like COV 3 (.1) Lus10043220 [exp] 272 / 1e-92 AT2G20120 324 / 9e-114 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G065800 [exp] 367 / 8e-129 AT1G43130 407 / 2e-145 like COV 2 (.1) Potri.005G148000 [exp] 323 / 3e-111 AT1G43130 319 / 2e-110 like COV 2 (.1) Potri.006G158100 [exp] 321 / 9e-111 AT2G20120 409 / 5e-146 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) Potri.018G082100 [exp] 314 / 6e-108 AT2G20120 412 / 2e-147 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) Potri.005G124100 [exp] 291 / 6e-99 AT2G18460 365 / 2e-128 like COV 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04367 [flax] [poplar] DUF502 Protein of unknown function (DUF502)
Representative CDS sequence Show only first row Show all	>Lus10018868 pacid=23144768 polypeptide=Lus10018868 locus=Lus10018868.g ID=Lus10018868.BGIv1.0 annot-version=v1.0 ATGGCGGACGAGAAAGAATCTTCGTCAAGTTCACTGAACCAAGGCCTGACACATCGTGAACCGGACCCGGACGATGACGATGACGACGATCTCAAGTCCG CTCCTGGATCCCCTACCTCCTCCACTCGCAAGGTAAGACGCCATCGCGAATTGTGGCAGGCTTGTTATGCTGTTCTACGAAGTTGGGCATCTAAGAAGTT CATGACTGGATGTGTTGTTCTATTTCCAGTTGCAGTAACCTTCATCGTCACATGGTGGTTTATCCAGTTGGTTGATGGTTTCTTCAGTCCGTTGTATGCT AAACTTGGGATTGACATATTTGGAATTATCAACCTGATGGGTGTCGGTCCATTCTTCTCTATTAGGTTATCATTTGCTTTCCTTGTGTTTGCTGCAGGAC TTGGATTTCTTACATCAGTTCTATTTGTATTCTTCGTGGGCATATTTGCTTCATCATGGCTGGGCACCACTGTTTTCTCACTTGGGGAATGGTTTATAAA GCGGATGCCATTCATGAGGCACATATATTCAGCCTCGAAACAAATAAGTGCTGCCATATCTCCTGACCAAAATACAACTGCATTCAAAGAGGTCGCTATC ATTCGGCATCCTCGTCATGGTGAATATGCATTTGGTTTCATCACATCGTCCCTTGTCCTTCAGAGGCACGATCGAGATGAAGAGCTGTGCAGTGTCTATG TCCCAACAAACCATCTGTACATTGGTGACATCTTCCTTGTCAATTCCGCAGATATCATCAGACCGAATCTATCCATCCGGGAAGGCATAGAGATCTTGGT TTCGGTGGGGATGACGATGCCGCAAGTGATATCAGCTGTGGAGAGGGTTACTACTCATCACCACCACAACAACAATAACACAATCCCACTTAACAGAATG GTGTAA
AA sequence Show only first row Show all	>Lus10018868 pacid=23144768 polypeptide=Lus10018868 locus=Lus10018868.g ID=Lus10018868.BGIv1.0 annot-version=v1.0 MADEKESSSSSLNQGLTHREPDPDDDDDDDLKSAPGSPTSSTRKVRRHRELWQACYAVLRSWASKKFMTGCVVLFPVAVTFIVTWWFIQLVDGFFSPLYA KLGIDIFGIINLMGVGPFFSIRLSFAFLVFAAGLGFLTSVLFVFFVGIFASSWLGTTVFSLGEWFIKRMPFMRHIYSASKQISAAISPDQNTTAFKEVAI IRHPRHGEYAFGFITSSLVLQRHDRDEELCSVYVPTNHLYIGDIFLVNSADIIRPNLSIREGIEILVSVGMTMPQVISAVERVTTHHHHNNNNTIPLNRM V

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G43130		LCV2	like COV 2 (.1)		Lus10018868 [exp]	0	1
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10021385 [exp]	1.4	0.9033
AT1G43130		LCV2	like COV 2 (.1)		Lus10028563 [exp]	2.0	0.8714
AT2G26070		RTE1	REVERSION-TO-ETHYLENE SENSITIV...		Lus10035322 [exp]	2.4	0.8575
AT1G69510			cAMP-regulated phosphoprotein ...		Lus10026615 [exp]	3.2	0.8450
AT5G50430		UBC33	ubiquitin-conjugating enzyme 3...		Lus10037459 [exp]	4.5	0.8777
AT2G19830		VPS32, SNF7.2	SNF7 family protein (.1)		Lus10012921 [exp]	6.9	0.8769
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Lus10025566 [exp]	7.7	0.8431
AT5G38895			RING/U-box superfamily protein...		Lus10034367 [exp]	10.0	0.8086
AT2G42780			unknown protein		Lus10010947 [exp]	11.8	0.8127
AT1G17455		ELF4-L4	ELF4-like 4 (.1.2)		Lus10000371 [exp]	14.0	0.8273

Compare expression of checked genes

Lus10018868 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.