Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76730 284 / 4e-95 NagB/RpiA/CoA transferase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028565 [exp] 322 / 1e-110 AT1G76730 479 / 1e-171 NagB/RpiA/CoA transferase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G194800 [exp] 293 / 1e-98 AT1G76730 515 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0246 [flax] [poplar] ISOCOT_Fold PF01812 [flax] [poplar] 5-FTHF_cyc-lig 5-formyltetrahydrofolate cyclo-ligase family
Representative CDS sequence Show only first row Show all	>Lus10018870 pacid=23144646 polypeptide=Lus10018870 locus=Lus10018870.g ID=Lus10018870.BGIv1.0 annot-version=v1.0 ATGGCGGAAGAAGCGGATAGAAAGAAGGATGGCGATGATGATGATGATCCGAAAGCTTGGAAGTGGATAATCTGGAAGAGGATTTGGGATCTGATGCGGA ACTTTGCGCAGAATCCCCGACCCGTTCAACACCGGATCCCCAACTTCGTCGGAGCCACGGCTGCTGATCAAAAGCTAGGTGAACTGGAAGCATTCAAAAC TGCCAACTGTGTGAAGGTAAACCCAGATTCACCTCAGAAGCAAGTTAGATTCTTAACAGTTTCTGAAACTACTAACTCCACAACCCAGGCTAAGAACAGG GTTCTTCTCGATCCTGGACCCACTCGGTGGCCTCAGGTTGAATCCGAGCACCATACTCGAGGCGTGCACCTCTGTCGGAGCAGCAAAATACGGAGGCCGA TTGGGTTGGATGAGAAGATTAAAGTTGACCTTATTGTCATTGGCTCTGTTGCTGTTGATCCCACTACTGGAGCTCGACTCGGTAAGGGGGAGGGATTTGC AGAACTCGAATACGGAATGTTGCAGTACATGGGCGCCATTGATGACTCTCCACCGGTTGTGACTTCAGTGCACGAATGTCAATTGGTAGACGATATACCA GTGGAGAAACTGCTGATCCACGATGTTCCTGTTGACATCATATGCACACCGACACGGATTCCGAAGCCTCAAGGGGTCTATTTGGATAAACTGTCGCCCG AGAAACTCGGGCAGATTCGCATACTGAGAGATCTCAGAAGTCGAATCGGAGAAGGAAACTGGACAGCAACTTCCCACCGGACCCTCCTACTGCCCAGAGG AAGAGACGCAGATGAACTGTATCGGGAAACGAATCTACCGAGCCTAAATAGTTGA
AA sequence Show only first row Show all	>Lus10018870 pacid=23144646 polypeptide=Lus10018870 locus=Lus10018870.g ID=Lus10018870.BGIv1.0 annot-version=v1.0 MAEEADRKKDGDDDDDPKAWKWIIWKRIWDLMRNFAQNPRPVQHRIPNFVGATAADQKLGELEAFKTANCVKVNPDSPQKQVRFLTVSETTNSTTQAKNR VLLDPGPTRWPQVESEHHTRGVHLCRSSKIRRPIGLDEKIKVDLIVIGSVAVDPTTGARLGKGEGFAELEYGMLQYMGAIDDSPPVVTSVHECQLVDDIP VEKLLIHDVPVDIICTPTRIPKPQGVYLDKLSPEKLGQIRILRDLRSRIGEGNWTATSHRTLLLPRGRDADELYRETNLPSLNS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76730			NagB/RpiA/CoA transferase-like...		Lus10018870 [exp]	0	1
AT3G01660			S-adenosyl-L-methionine-depend...		Lus10003648 [exp]	2.0	0.8510
AT5G59140			BTB/POZ domain-containing prot...		Lus10016485 [exp]	3.2	0.8673
AT2G17900		ASHR1, SDG37	ASH1-related 1, SET domain gro...		Lus10029712 [exp]	10.1	0.8511
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Lus10012092 [exp]	10.6	0.8353
AT2G17787			unknown protein		Lus10017274 [exp]	12.9	0.8566
AT3G11730		ATFP8, AtRABD1	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10041117 [exp]	13.0	0.8136
AT5G52880			F-box family protein (.1)		Lus10027549 [exp]	14.0	0.8496
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Lus10012931 [exp]	14.5	0.8454
AT4G28706			pfkB-like carbohydrate kinase ...		Lus10000210 [exp]	15.0	0.8045
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10034964 [exp]	15.6	0.7792

Compare expression of checked genes

Lus10018870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.