Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028567 [exp] 446 / 9e-160 ND 43 / 2e-04 Lus10016220 [exp] 47 / 1e-05 AT5G39570 82 / 7e-17 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G148800 [exp] 42 / 0.0006 AT1G10390 606 / 0.0 Nucleoporin autopeptidase (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018873 pacid=23144715 polypeptide=Lus10018873 locus=Lus10018873.g ID=Lus10018873.BGIv1.0 annot-version=v1.0 ATGGCCGATGAGGAGCAGCCCCGACACACCGACCGCGGCCTATTCGGCTGGGGCAAGGACAAGTCTAACCACGACGACAAGAAGCCCTCGTCGGAGGAGG ACACCCCCGGTGGCTACGGTGGCAGGAAAACCGAGACTGGCTACGGTGGGACTGATGACAGGTTCGGGTCGGATGATTTGAAAACCGAAACCGGTTATGG TCAGAAAGAAAGCGGTCAGACCGAAACTGGCTATGGTAACACGAACAAGTATGGGTCCGATGACCAAACTACCGAGACTGGCTACGGTGGATCAGCTGAC CAGACCGAAAATCGCTATAGTAGCACCAAAAAGTATGGATCTGATGGCCATAATACCGAGAGTGGTTACGGCCGCAAAGAAGGTGGTTACGGGTCCACTG ACCAGACCGAAACCGAGTATGGTTCCACCAACAAGTACGGATCGGATGAGTTGAAGACGGAGTCCGGTTATGGTCGTAAAGAGACTGGGTATGGGTCGAC TGAGCAGACTGAAACTGGATATGGTAACACCAACAAGTACGGATCGGATGATCAACAGACCGGGTCTGGTTACGGTCGCAAAGAAACCGGTTACGGGTCC ACTGAGCAGACCGAAACTGGCTATGGGAGCACCAACAAGTACGGATCTGATGAACAGCAAACCGAATCCGGCTACGGTCGTAAAGAAACCGGTTACGGGT CGACTGAGCAAACCGGAACTGGCTATGGCGGCAAAACCTCGAACTACGAGTCGTCTGAGCAGACAGGAACCGAATACGACGACACCAACAAGTATGGATC TCAGGAGACAGGGGAGAAGAAGAAGCATGGCTTCTTTGGCTAA
AA sequence Show only first row Show all	>Lus10018873 pacid=23144715 polypeptide=Lus10018873 locus=Lus10018873.g ID=Lus10018873.BGIv1.0 annot-version=v1.0 MADEEQPRHTDRGLFGWGKDKSNHDDKKPSSEEDTPGGYGGRKTETGYGGTDDRFGSDDLKTETGYGQKESGQTETGYGNTNKYGSDDQTTETGYGGSAD QTENRYSSTKKYGSDGHNTESGYGRKEGGYGSTDQTETEYGSTNKYGSDELKTESGYGRKETGYGSTEQTETGYGNTNKYGSDDQQTGSGYGRKETGYGS TEQTETGYGSTNKYGSDEQQTESGYGRKETGYGSTEQTGTGYGGKTSNYESSEQTGTEYDDTNKYGSQETGEKKKHGFFG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10018873 [exp]	0	1
					Lus10028567 [exp]	3.0	0.8627
AT1G61350			ARM repeat superfamily protein...		Lus10018423 [exp]	5.3	0.8045
AT5G22290	NAC	FSQ6, FAN, ANAC...	fructose-sensing quantitative ...		Lus10042518 [exp]	6.5	0.7802
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10006593 [exp]	6.5	0.8338
AT1G12630	AP2_ERF		Integrase-type DNA-binding sup...		Lus10027413 [exp]	6.6	0.8442
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10006594 [exp]	8.9	0.8254
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10001686 [exp]	9.2	0.8223
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Lus10008419 [exp]	10.5	0.7921
ATCG00120		ATCG00120.1, AT...	ATP synthase subunit alpha (.1...		Lus10004894 [exp]	11.5	0.8081
AT1G73300		SCPL2	serine carboxypeptidase-like 2...		Lus10012718 [exp]	13.9	0.8025

Compare expression of checked genes

Lus10018873 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.