Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43245 253 / 2e-76 SET domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028568 [exp] 744 / 0 AT1G43245 308 / 8e-98 SET domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G193500 [exp] 345 / 9e-111 AT1G43245 262 / 2e-79 SET domain-containing protein (.1) Potri.005G193701 [exp] 164 / 1e-45 AT1G43245 120 / 3e-30 SET domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10018874 pacid=23144640 polypeptide=Lus10018874 locus=Lus10018874.g ID=Lus10018874.BGIv1.0 annot-version=v1.0 ATGGAGATGAGAGCCGGAGAGGAAGTGGAGATCGGCTCCGACGTGACGCCGGCCTTATCTCCGATATCATATGCCCTCCACGATTCGTTCCTTAGCTCCC ACTGTTCCTCGTGCTTCTCGCCTCTCCCTGATCCGCCTTTTCTTCCTACCAGCGACCGTAATCTCTCATCCACCTCCGTCTTCTACTGTTCTGAACTCTG TTCATCCGTCGATTCATCTCTCCATTTCTCCTCCGGCGAGTTTCACCTCCACAGCTCCTCGACTTCCTCTTCCTCGGCGGATCTCCGATCCGCTCTCCGC CTCCTCCGATCAGCTTGTTTCTCTCCTTCTAATGACAGGATGTCAGGTTTGTTGACGAATCGAGAGAAAATACTCGCTGATGACGACGAGATCTCCGATC GAGTCAGGACCGGAGCTAGGGTGATGGCGGCTGCGAGGCGGGAAAAAACGAGAGACGGTGCAGGATTGATACTGATAGAGGAGGAGGCTGCGCTGTGTTT GGTGATTACCAATGGAGTTGAAGTTCTCGATTCCAGATCCCGATCGATCGGGATCGCAGTCTACGATTCTACTTTCTCCTGGATCAATCACAGCTGCTCT CCAAACTCCTGCTACCGATTCATTTTCTCTCCGCCTGCTGAATCCCCGGATTCTGCTCCGCGAATCGTTCCTTCCGGTTCTGGGGTGGATAATGATGCCG CCGGCGGTCGGATGAGAAACTTCGGCGGCGGATACGGGCCGAGGATTGTGGTGAGGAGCATTAGAAGGATTGAGAAAGGCGAAGAAGTGACAGTGGCGTA TACAGACTTGTTACAGCCAAAGGCAGTAAGAAAGTCAGAGCTATGGTTGAAATACAGATTCATCTGCATCTGTGCACGCTGCTGTTCATCATCATCACCT TCATCCTACGTTGATCATGCTGTAGAGGACATTTCATCCTCGAGTTCGCAACTCTTTGATGCAGCTCGAGCCAATGAAATACTAACCGATTATGTGGACG AAGCCATAACAACCTTCCTCCTCTCAGAAGGCGACAATCCCGAACCTTGCTGTGCACAGCTCGAACGCCTCCTCATCGCAGGACTCGATCAACCGGATAT GATTCTCCGGTTGCATCCTCTCCATCACCTCTCCCTCAATGCATACACAACTCTAGCTTCTGCATACAGCATTCGCGCCAGCATACACGAAGCTTTCAAC GAGTCCAGGACCAGCGCTGCATACTCATTCTTCCTCGCAGCTGCAGCTAACCGCCTCTTCGACTTCGAGCCTTCGCTGATCGTTTCGGTCTCGAACTACT GGGCAAGTGCTGGAGAAGCCTTACTGAGACTTGTCTCAATCTCAAGCACTACTAATGCTGCTACTACCTCTCTTGCGGAGCGTCATCGTTGTTCGAAATG CCGGTTCATGGATGTCGGTCTGGCCATAGCCACAGCCAATGCTGATTTTACATCGATTTCGTTTGAGCTTGTCGGTTGTATCAGGAGCTATGCAAGGAAA GTGTGGTGGTTCCTGTCGAATGGATGCCAGTTCTTGGCACAGTTCAACGATCCGATGGATTTCGATTTGATTCAGAAGCCAGTCTCCACTCCTTGTGATC GAACTCAAGGATTTGGATTCATGGATCGAGAGATTAGGACGGATGTTTGGCAGCTTGGTGCACATTGCTTGGTCTATGGAGGATTTCTATCGACTGTTTG CTACGGTCGTGATCATTCCCCTTGGACTGATAAGATTCGAAAATTTCTCACTTGA
AA sequence Show only first row Show all	>Lus10018874 pacid=23144640 polypeptide=Lus10018874 locus=Lus10018874.g ID=Lus10018874.BGIv1.0 annot-version=v1.0 MEMRAGEEVEIGSDVTPALSPISYALHDSFLSSHCSSCFSPLPDPPFLPTSDRNLSSTSVFYCSELCSSVDSSLHFSSGEFHLHSSSTSSSSADLRSALR LLRSACFSPSNDRMSGLLTNREKILADDDEISDRVRTGARVMAAARREKTRDGAGLILIEEEAALCLVITNGVEVLDSRSRSIGIAVYDSTFSWINHSCS PNSCYRFIFSPPAESPDSAPRIVPSGSGVDNDAAGGRMRNFGGGYGPRIVVRSIRRIEKGEEVTVAYTDLLQPKAVRKSELWLKYRFICICARCCSSSSP SSYVDHAVEDISSSSSQLFDAARANEILTDYVDEAITTFLLSEGDNPEPCCAQLERLLIAGLDQPDMILRLHPLHHLSLNAYTTLASAYSIRASIHEAFN ESRTSAAYSFFLAAAANRLFDFEPSLIVSVSNYWASAGEALLRLVSISSTTNAATTSLAERHRCSKCRFMDVGLAIATANADFTSISFELVGCIRSYARK VWWFLSNGCQFLAQFNDPMDFDLIQKPVSTPCDRTQGFGFMDREIRTDVWQLGAHCLVYGGFLSTVCYGRDHSPWTDKIRKFLT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G43245			SET domain-containing protein ...		Lus10018874 [exp]	0	1
AT1G17400			unknown protein		Lus10027660 [exp]	10.0	0.6836
AT3G02125			unknown protein		Lus10032983 [exp]	14.1	0.6911
					Lus10012330 [exp]	24.4	0.7526
AT4G37470			alpha/beta-Hydrolases superfam...		Lus10014859 [exp]	38.6	0.7238
AT4G20040			Pectin lyase-like superfamily ...		Lus10001376 [exp]	39.5	0.7244
AT2G28130			unknown protein		Lus10021421 [exp]	53.5	0.7161
AT4G17085			Putative membrane lipoprotein ...		Lus10029696 [exp]	55.2	0.7094
AT2G30530			unknown protein		Lus10034444 [exp]	59.9	0.6917
AT5G54510		DFL1, GH3.6	DWARF IN LIGHT 1, Auxin-respon...		Lus10003598 [exp]	83.2	0.7034
AT3G18035		HON4	winged-helix DNA-binding trans...		Lus10024594 [exp]	92.3	0.6983

Compare expression of checked genes

Lus10018874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.