Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43620 800 / 0 UGT80B1, TT15 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) AT3G07020 605 / 0 UGT80A2, SGT UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) AT5G24750 65 / 9e-11 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028572 [exp] 1252 / 0 AT1G43620 840 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Lus10011882 [exp] 588 / 0 AT3G07020 885 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10020382 [exp] 558 / 0 AT3G07020 790 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10022815 [exp] 548 / 0 AT3G07020 742 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10024544 [exp] 538 / 0 AT3G07020 714 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10009556 [exp] 537 / 0 AT3G07020 707 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10011883 [exp] 495 / 3e-169 AT3G07020 648 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10020381 [exp] 417 / 1e-138 AT3G07020 568 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10009557 [exp] 187 / 4e-54 AT3G07020 261 / 6e-83 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G067100 [exp] 890 / 0 AT1G43620 800 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Potri.005G193100 [exp] 848 / 0 AT1G43620 805 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Potri.014G178300 [exp] 592 / 0 AT3G07020 817 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G238600 [exp] 585 / 0 AT3G07020 839 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.003G021100 [exp] 74 / 1e-13 AT5G24750 606 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase CL0113 [flax] [poplar] GT-B PF03033 [flax] [poplar] Glyco_transf_28 Glycosyltransferase family 28 N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10018878 pacid=23144699 polypeptide=Lus10018878 locus=Lus10018878.g ID=Lus10018878.BGIv1.0 annot-version=v1.0 ATGTGGTTGAATCTGAGTGATGAAATGGGGATTAGCTGTAACAATCATCCGTTAAGTAACTCAGAGGAAGGATTCGATGACAATCATGGTCTCGATGAAG ACTCGAGGAGGGAGACTCCTGATGTTCCTGAATCAATGACCGAGGATTACAAGTATCCGGAAGAACAATTTACAGTGCCTACCAGTAAAGAATCCAAAAA CCAACCCGAGTTGCGTTCTGAGTCACAGATGGAGAGTTCGGATCAAGAAGGCTCCAAAACCACTTCTTCCCCTCGAAAAGGCTTGGAACACAGCATTAGT GAACCGGTTGGTGCTCACAGAAACTTGGTGGTCGACGAGAAGGACAACATCACCTTTTATAGATCCATCACCGAGCAGCGATCGAAGCATGAGCTGAAGT TTCACCGCTTCTTCGACCAAGAAAAGAACAAATTGCTTATAGAGCTAGTCAGAGTCCAACGTGATGGAACGGTGGAAGTCGACTTGGACAAAAATGATTC GGTTACTTCAGAGTTGTTAGAGTTTCACTCAGTTAGCGGTGCATCCTTCATTATCGACGAAGACACCTCTGCTGTAAACAAACCAATTCCAAAGCTGAAT ATTGCGATCCTTGTGGTCGGAACACGAGGAGATGTCCAACCTTTCTTGGCCATGGCAAAGAGGCTTCAGGAATTTGGCCATCGTGTTAGGTTGGCGACTC ATGCTAATTTTAGGAGTTTTGTGAAGGCAGCTGGTGTGGGCTTTTATCCATTGGGTGGCGACCCTCGGGTTTTGGCTGGATATATGGCTCGTAATAAAGG TTTGATCCCTTCGTCGCCTGGAGAGATATCCATTCAAAGGAAGCAAATGAAGGACATCATCGAGTCCCTTCTCCCGGCATGTACAGAACCAGACCCCGAA ACTGGTGTCTCGTTTAAAGCTCAGGCCATTATCGCAAACCCTCCCGCTTATGGACACGTCCACGTTGCTGAAGCTCTAGGCATACCAATCCACATTTTCT TCACGATGCCATGGACGCCGACATATGAATTCCCGCATCCTTTGGCTCGTGTACCTCAAAGTGCTGGCTATTGGCTTTCCTACATTCTTGTGGATTTATT GATATGGTGGGGGATAAGAGGATACATCAATGACTTCAGAAAGAAACTGAAGCTTCAACCAATTGCTTATTACAGCATGTACCATGGATCGATATCTCAT CTTCCTACCGGTTATTTGTGGAGTCCGAGTCTCGTGTCGAAACCAATGGACTGGGGACCTCAAGTTGATGTAGTTGGCTATTGCTTCTTAAACCTTGCAT CGAAATATGAACCTCAACGAGAGTTCACCGAATGGATACAAAGGGGAACCAAGCCTATATATATCGGGTTTGGAAGCATGCCTCTTGAAGATCCCGAGAA GACGATGGAAATAATACTCGAGGCGTTGAAAGAGACGGAGCAGAGAGGGATCATCGACCGAGGGTGGGGTGGCCTAGGGAGTCTTGTGGAAGCCCCTGAT GATGTTTTCCTCCTCGAGGACTGCCCTCATGATTGGTTATTTCCTCAGTGTGCAGCTGTGGTTCATCATGGTGGTGCTGGCACAACAGCTACAGGACTAA GAGCCGGCTGCCCGACAACCATAGTTCCATTCTTCGGAGACCAATTCTTCTGGGGAGATAGATTGTTCAACAAGGGATTGGGACCTCAACCTATCCCCAT TTCCCAGCTTACCGTCGAAAACCTCTCGAGTGCTATACAATTCATGCTCCAGCCAGAGGTCAAAGATCGAGCGACAGAGCTTGCGAAACTGATCGACAAT GAAGATGGCGTGGCGGGTGCTGTCGATGCTTTCCACAGGCAGTTACCTTCTACAATGCCTTCGCCTGCTGCCTCGTCGTCTTCAGACTCCGATGATGAGC TTTCGAACGGTCTGCAATGGTTTTTCGCTAAAATCGGGATGATATGCTGCCTTCCTTGTAGTCCTAATTAG
AA sequence Show only first row Show all	>Lus10018878 pacid=23144699 polypeptide=Lus10018878 locus=Lus10018878.g ID=Lus10018878.BGIv1.0 annot-version=v1.0 MWLNLSDEMGISCNNHPLSNSEEGFDDNHGLDEDSRRETPDVPESMTEDYKYPEEQFTVPTSKESKNQPELRSESQMESSDQEGSKTTSSPRKGLEHSIS EPVGAHRNLVVDEKDNITFYRSITEQRSKHELKFHRFFDQEKNKLLIELVRVQRDGTVEVDLDKNDSVTSELLEFHSVSGASFIIDEDTSAVNKPIPKLN IAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRSFVKAAGVGFYPLGGDPRVLAGYMARNKGLIPSSPGEISIQRKQMKDIIESLLPACTEPDPE TGVSFKAQAIIANPPAYGHVHVAEALGIPIHIFFTMPWTPTYEFPHPLARVPQSAGYWLSYILVDLLIWWGIRGYINDFRKKLKLQPIAYYSMYHGSISH LPTGYLWSPSLVSKPMDWGPQVDVVGYCFLNLASKYEPQREFTEWIQRGTKPIYIGFGSMPLEDPEKTMEIILEALKETEQRGIIDRGWGGLGSLVEAPD DVFLLEDCPHDWLFPQCAAVVHHGGAGTTATGLRAGCPTTIVPFFGDQFFWGDRLFNKGLGPQPIPISQLTVENLSSAIQFMLQPEVKDRATELAKLIDN EDGVAGAVDAFHRQLPSTMPSPAASSSSDSDDELSNGLQWFFAKIGMICCLPCSPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G43620		UGT80B1, TT15	TRANSPARENT TESTA 15, UDP-Glyc...		Lus10018878 [exp]	0	1
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10042785 [exp]	4.8	0.7922
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10029756 [exp]	14.8	0.7541
AT4G02680		EOL1	ETO1-like 1 (.1)		Lus10022084 [exp]	32.4	0.7403
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Lus10024455 [exp]	41.6	0.7084
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Lus10033187 [exp]	44.5	0.6896
AT5G15540		EMB2773, ATSCC2	EMBRYO DEFECTIVE 2773, ARABIDO...		Lus10032966 [exp]	54.2	0.7004
AT2G38610			RNA-binding KH domain-containi...		Lus10035608 [exp]	61.2	0.6829
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Lus10043225 [exp]	62.9	0.6900
AT5G19460		ATNUDT20	nudix hydrolase homolog 20 (.1...		Lus10017736 [exp]	63.0	0.6916
AT1G15810			S15/NS1, RNA-binding protein (...		Lus10010090 [exp]	68.2	0.6335

Compare expression of checked genes

Lus10018878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.