Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07050 594 / 0 NSN1 nucleostemin-like 1, GTP-binding family protein (.1) AT1G52980 212 / 3e-61 AtNug2 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) AT1G08410 129 / 2e-31 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G27200 125 / 2e-30 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G02790 89 / 4e-19 EMB3129 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) AT2G41670 52 / 5e-07 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G58370 44 / 0.0003 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G22870 42 / 0.0007 EMB2001 embryo defective 2001, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028574 [exp] 811 / 0 AT3G07050 743 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10018858 [exp] 696 / 0 AT3G07050 622 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10023835 [exp] 164 / 1e-43 AT1G52980 708 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Lus10013359 [exp] 126 / 1e-30 AT1G08410 745 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10004103 [exp] 125 / 3e-30 AT1G08410 756 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021017 [exp] 112 / 2e-26 AT1G52980 591 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Lus10006927 [exp] 82 / 6e-17 AT4G02790 462 / 2e-164 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Lus10014672 [exp] 81 / 6e-16 AT4G02790 414 / 8e-142 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Lus10006578 [exp] 62 / 5e-10 AT4G10650 394 / 1e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G241100 [exp] 621 / 0 AT3G07050 667 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Potri.001G402500 [exp] 211 / 8e-61 AT1G52980 811 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Potri.009G017000 [exp] 122 / 3e-29 AT1G08410 755 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G209900 [exp] 83 / 6e-17 AT4G02790 476 / 5e-169 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Potri.012G083100 [exp] 59 / 5e-09 AT4G10650 428 / 4e-150 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G048900 [exp] 52 / 4e-07 AT2G41670 559 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.019G128000 [exp] 45 / 0.0001 AT5G58370 461 / 1e-158 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08701 [flax] [poplar] GN3L_Grn1 GNL3L/Grn1 putative GTPase CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Lus10018881 pacid=23144750 polypeptide=Lus10018881 locus=Lus10018881.g ID=Lus10018881.BGIv1.0 annot-version=v1.0 ATGCCGAAAAAGAGCAAGAAGAGTAAGAGTAAGAGGATCACCTTGAAGCAGAAACACAAGGTGATAAAGAAGGTGAAGGAGCACCACAAGAAGAAAGCGA AGGAGGCTAAGAAGCTTGTCCGCACCGGCAAGAGGAAGGTCGAGAAGGATCCAGGGATCCCCAATGACTGGCCTTTCAAGGAGCAGGAGCTCAAGGCTCT CGAAGCTCGTCGCGCTCGTGCTCTGGAGGAGATCGAGCAAAAGAAAGCTGACCGCAAGGAACGTGCTCGAAAGAGGAAGTTGGGGATATTAGAGGAAGAA GAGGATGCTGGAGTTGTGCCTGATGAGAAGAAGGCCAAACAGCAGCATCATATTGGAGTTGCTCAGAATCGGGATAGTGCAGATAGGGTGTTCTACAAGG AACTGGTCAAGGTGATCGAAGTATCGGATGTCATTTTGGAAGTTCTTGATGCTAGGGATCCCTTAGGTACACGCTGTGCCGATATGGAGAAGATGGTGAT GAAAGCTGGCCCCGAGAAGCATCTAGTCTTGCTTCTGAATAAAATCGATCTTGTTCCTCGAGAAGCTGTTGAAAAATGGCTCAAGTATCTTAGAGAAGAG CTACCTGCTGTTGCATTCAAGTGCAGTACTCAAGAACAGAGGACAAATTTGGGTTGTAAAAAGTCTTCCAAAAAGCCGGCAAAGCCGAGCAAGTTGTTGC AAAGTAGTGATTGTCTTGGAGCTGATACTCTGATTAAGTTGCTGAAAAATTACTCTAGAAGTCATGATATTAAGAAGAGTATTACTGTTGGGGTGATTGG TCTTCCTAATGTCGGTAAGAGTAGTCTCATTAACAGTTTGAAAAGAAGCCATGTCGCAAATGTAGGTGCTACCCCTGGGTTGACGAGATCGTTGCAAGAG ATTCAGTTGGACAAGAACGTTAAATTGGTCGATTGTCCCGGTGTTGTCATGCTGAAATCTCAGGAGAACGATGCCTCTGTTGCTCTTCGAAATTGCAAAA GGATTGAGAAGTTGGATGATCCTATTACTCCAGTGAAGGAAATTCTCAACCGCTGCCCGGAAAGGCTTATGGTTACACTGTACAAGATCCCGAGTTTCGA AGGTGTCGATGACTTCTTGCAGAAGTTGGCTACTGTAAGAGGACGGCTGAAAAAGGGTGGTATAGTAGATGTCGATGCTGCTGCGAGAATTGTACTACAC GATTGGAATGCCGGGAAGATTCCATATTACACCCTGCCTCCAACAAGGGACCAAGAGGGAGCTTCGGAGGCAAAGATAGTTACTGAGGTGGGCAAGGAGT TCAACATTGACGAAGTCTACAATGGGGAGTCTTCATTTATCGGAAGTCTGAAGTCATTAGGAGACTTCAATCCTGTTGAACATCAGAAGTCAGACACCGA CGAAATGAAGGATGCAGATGAAGACACAGTAGGTGGTGCAGTAGATACTGCAAAGTCGAAGAATGCGACGAGCAGGCAGAACGAGAAGCTGTATGATGTG GAAGGCATGGTGAACAACAAGATGAAGAAAGCGGAGAGGAAGCGAAGGAAGAAAGCTGCGAAAGTGGATGCCATGGACGATGATGCCGGTAACGATGACT ATGACTTCAAAGTTGACTATAAGAAGAAGGGCTGGTCGGCCATGGATGAGGATAGCGATGAAGAGGAGGACGACGATGAGAAGATAATCGGTAAGGTGCC AATGGCTGATGTTCAGTTTCCCAACGATGAGTGA
AA sequence Show only first row Show all	>Lus10018881 pacid=23144750 polypeptide=Lus10018881 locus=Lus10018881.g ID=Lus10018881.BGIv1.0 annot-version=v1.0 MPKKSKKSKSKRITLKQKHKVIKKVKEHHKKKAKEAKKLVRTGKRKVEKDPGIPNDWPFKEQELKALEARRARALEEIEQKKADRKERARKRKLGILEEE EDAGVVPDEKKAKQQHHIGVAQNRDSADRVFYKELVKVIEVSDVILEVLDARDPLGTRCADMEKMVMKAGPEKHLVLLLNKIDLVPREAVEKWLKYLREE LPAVAFKCSTQEQRTNLGCKKSSKKPAKPSKLLQSSDCLGADTLIKLLKNYSRSHDIKKSITVGVIGLPNVGKSSLINSLKRSHVANVGATPGLTRSLQE IQLDKNVKLVDCPGVVMLKSQENDASVALRNCKRIEKLDDPITPVKEILNRCPERLMVTLYKIPSFEGVDDFLQKLATVRGRLKKGGIVDVDAAARIVLH DWNAGKIPYYTLPPTRDQEGASEAKIVTEVGKEFNIDEVYNGESSFIGSLKSLGDFNPVEHQKSDTDEMKDADEDTVGGAVDTAKSKNATSRQNEKLYDV EGMVNNKMKKAERKRRKKAAKVDAMDDDAGNDDYDFKVDYKKKGWSAMDEDSDEEEDDDEKIIGKVPMADVQFPNDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Lus10018881 [exp]	0	1
AT2G18330			AAA-type ATPase family protein...		Lus10028305 [exp]	3.5	0.8892
AT2G18330			AAA-type ATPase family protein...		Lus10041751 [exp]	9.2	0.8642
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Lus10020369 [exp]	9.2	0.8770
AT5G14520			pescadillo-related (.1)		Lus10002201 [exp]	11.5	0.8551
AT1G63660			GMP synthase (glutamine-hydrol...		Lus10024632 [exp]	12.0	0.8625
AT1G63660			GMP synthase (glutamine-hydrol...		Lus10032268 [exp]	12.8	0.8666
AT5G09510			Ribosomal protein S19 family p...		Lus10018777 [exp]	15.5	0.8475
AT2G42710			Ribosomal protein L1p/L10e fam...		Lus10036988 [exp]	20.0	0.7946
AT4G30930		WRKY32, NFD1	NUCLEAR FUSION DEFECTIVE 1, Ri...		Lus10011178 [exp]	22.4	0.8194
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Lus10028574 [exp]	23.4	0.8479

Compare expression of checked genes

Lus10018881 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.