Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76770 154 / 6e-45 HSP20-like chaperones superfamily protein (.1) AT1G76780 73 / 1e-13 HSP20-like chaperones superfamily protein (.1) AT1G07400 41 / 0.0004 HSP20-like chaperones superfamily protein (.1) AT1G59860 40 / 0.0006 HSP20-like chaperones superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028577 [exp] 459 / 7e-163 AT1G76770 152 / 3e-44 HSP20-like chaperones superfamily protein (.1) Lus10024258 [exp] 47 / 5e-06 AT5G04890 61 / 2e-11 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) Lus10032902 [exp] 45 / 2e-05 AT1G54400 89 / 4e-22 HSP20-like chaperones superfamily protein (.1) Lus10026262 [exp] 42 / 0.0004 AT4G10250 152 / 5e-47 HSP20-like chaperones superfamily protein (.1) Lus10042408 [exp] 41 / 0.0005 AT4G10250 154 / 1e-47 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G067700 [exp] 203 / 2e-61 AT1G76770 160 / 3e-46 HSP20-like chaperones superfamily protein (.1) Potri.005G192700 [exp] 203 / 2e-60 AT1G76770 147 / 2e-40 HSP20-like chaperones superfamily protein (.1) Potri.013G054700 [exp] 42 / 0.0001 AT1G54400 93 / 3e-24 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF00011 [flax] [poplar] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Lus10018882 pacid=23144651 polypeptide=Lus10018882 locus=Lus10018882.g ID=Lus10018882.BGIv1.0 annot-version=v1.0 ATGGAGGTGGAATTGGGATTGAAGATTACCCATACACGAGACGACATCACTTCGTTCGTTGATCTTCAAATCTCGAAAGACCATTTGGGGCCCGTCTTCT TGTCTAGGGAGACTGAGTCTGTGTTCCTCCTCATTGCGTACCTCCAAGGGTTCAAGAAGGAGAATGTGGGCATAAAGATCAACAAAGAAGGGAATCAGAT CGAAATAACTGGCGAGAAGCCGGTTCAAGAAATGGTGATGATGGGTTGGATCATGTACAAGAAAGAGGTTGAGCTGAGAGTCTTCAGGAAAGCTTTCAGG ATTCCTGAAGCCATTATTATAGACAAGATCAAGGCCAAGTTCAATGATCAGGACTCCGTCCTGACCATCTTTATCCCCAAATGGGAGAAGGGAATGCGTA ATGAATCAATTGAAGAAGTCAAGGAGTCCGAAGATATTGGTATTAGCTTGCCTGGAAGTCCTAGAAATCTTCCTGACAGTGCGCCTGTAATGAAAGAAGT CGACGAAGAACCTGACAAGAAAAAACCTGAAGAGGTTTTGGAGGAAAAGAAAGTAGGTAAAACCGTAAGATTCGCAGAAATAGTAAAAGGGAAAGAACGT GCAGAGGAAAAGAGTTCTCCTTCGTATGAGGCGAATCCTGAAACCAATACCGAAGAAGACTACGTAGAAGAAAACGGGTTTGTCAAGGATGAGAAATTCG AGGGTGAAGAAACTGTACGAATGCATCCCGGAATGACAGAACCCGAGGAATCTATAGAGGTCAAACCTGAGAAGGAATCGAGGAAGCACGGAATTTGCTA CGAAGAGGAGACGAGAGACGAAGGATTCTCCGAGGAAGAAGGATCGGAGAAGGAAGAAGAACCCGAGAGTAGTAGTGATGAAGAAACCAGAGGGGAAAGT TTAGGTGATGAAGTAAATGAGGAATCTTCAGATAAACCTAAGAAGAAAGATAAGTTTTGTCATCCAATGATGATTGCGGGATCTGGGATTCTAGTTACAA TTATAGTTATGGCAGTCGGTTTGATCCGATCTAGAAGAAAACGAGTTACTGTAAGTTCGAATTCTGGTCATTGA
AA sequence Show only first row Show all	>Lus10018882 pacid=23144651 polypeptide=Lus10018882 locus=Lus10018882.g ID=Lus10018882.BGIv1.0 annot-version=v1.0 MEVELGLKITHTRDDITSFVDLQISKDHLGPVFLSRETESVFLLIAYLQGFKKENVGIKINKEGNQIEITGEKPVQEMVMMGWIMYKKEVELRVFRKAFR IPEAIIIDKIKAKFNDQDSVLTIFIPKWEKGMRNESIEEVKESEDIGISLPGSPRNLPDSAPVMKEVDEEPDKKKPEEVLEEKKVGKTVRFAEIVKGKER AEEKSSPSYEANPETNTEEDYVEENGFVKDEKFEGEETVRMHPGMTEPEESIEVKPEKESRKHGICYEEETRDEGFSEEEGSEKEEEPESSSDEETRGES LGDEVNEESSDKPKKKDKFCHPMMIAGSGILVTIIVMAVGLIRSRRKRVTVSSNSGH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76770			HSP20-like chaperones superfam...		Lus10018882 [exp]	0	1
AT1G76770			HSP20-like chaperones superfam...		Lus10028577 [exp]	2.4	0.9599
AT3G18260			Reticulon family protein (.1)		Lus10032451 [exp]	5.1	0.9501
AT3G44735		PSK1, ATPSK3	PHYTOSULFOKINE 3 PRECURSOR (.1...		Lus10027716 [exp]	5.5	0.9359
AT2G20362			unknown protein		Lus10024963 [exp]	7.4	0.9459
AT1G54400			HSP20-like chaperones superfam...		Lus10032902 [exp]	7.5	0.9466
AT1G47271			Cystathionine beta-synthase (C...		Lus10001964 [exp]	8.4	0.9439
AT1G13920			Remorin family protein (.1)		Lus10004665 [exp]	10.4	0.9459
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10009316 [exp]	11.0	0.9458
AT5G18970			AWPM-19-like family protein (....		Lus10041238 [exp]	12.0	0.9434
AT2G42820		HVA22F	HVA22-like protein F (.1)		Lus10031386 [exp]	12.0	0.9331

Compare expression of checked genes

Lus10018882 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.