Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76900 560 / 0 TUB AtTLP1 tubby like protein 1 (.1.2) AT1G25280 546 / 0 TUB AtTLP10 tubby like protein 10 (.1.2.3) AT1G43640 545 / 0 TUB AtTLP5 tubby like protein 5 (.1) AT2G47900 440 / 2e-153 TUB AtTLP3 tubby like protein 3 (.1.2.3) AT2G18280 401 / 4e-138 TUB AtTLP2 tubby like protein 2 (.1.2) AT1G47270 385 / 1e-131 TUB AtTLP6 tubby like protein 6 (.1.2) AT5G18680 365 / 3e-124 TUB AtTLP11 tubby like protein 11 (.1) AT3G06380 355 / 4e-120 TUB ATTLP9 tubby-like protein 9 (.1) AT1G53320 324 / 5e-108 TUB AtTLP7 tubby like protein 7 (.1) AT1G16070 68 / 4e-12 TUB AtTLP8 tubby like protein 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028579 [exp] 788 / 0 AT1G25280 597 / 0.0 tubby like protein 10 (.1.2.3) Lus10029780 [exp] 665 / 0 AT1G76900 615 / 0.0 tubby like protein 1 (.1.2) Lus10034106 [exp] 648 / 0 AT1G25280 585 / 0.0 tubby like protein 10 (.1.2.3) Lus10043482 [exp] 635 / 0 AT1G25280 589 / 0.0 tubby like protein 10 (.1.2.3) Lus10042807 [exp] 523 / 2e-175 AT3G53760 1013 / 0.0 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) Lus10033977 [exp] 405 / 2e-139 AT2G47900 548 / 0.0 tubby like protein 3 (.1.2.3) Lus10012803 [exp] 402 / 5e-139 AT2G47900 523 / 0.0 tubby like protein 3 (.1.2.3) Lus10014299 [exp] 380 / 3e-129 AT2G18280 492 / 5e-174 tubby like protein 2 (.1.2) Lus10010833 [exp] 377 / 1e-128 AT1G47270 469 / 3e-165 tubby like protein 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G192300 [exp] 699 / 0 AT1G76900 609 / 0.0 tubby like protein 1 (.1.2) Potri.002G068200 [exp] 691 / 0 AT1G76900 603 / 0.0 tubby like protein 1 (.1.2) Potri.005G192400 [exp] 686 / 0 AT1G76900 607 / 0.0 tubby like protein 1 (.1.2) Potri.007G023400 [exp] 415 / 2e-143 AT2G18280 519 / 0.0 tubby like protein 2 (.1.2) Potri.008G195200 [exp] 405 / 7e-140 AT2G47900 544 / 0.0 tubby like protein 3 (.1.2.3) Potri.005G121600 [exp] 405 / 2e-139 AT2G18280 504 / 4e-179 tubby like protein 2 (.1.2) Potri.005G228500 [exp] 404 / 3e-139 AT1G47270 472 / 7e-166 tubby like protein 6 (.1.2) Potri.010G031000 [exp] 404 / 3e-139 AT2G47900 531 / 0.0 tubby like protein 3 (.1.2.3) Potri.002G034600 [exp] 397 / 3e-136 AT1G47270 490 / 4e-173 tubby like protein 6 (.1.2) Potri.001G390200 [exp] 329 / 4e-110 AT1G53320 516 / 0.0 tubby like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF01167 [flax] [poplar] Tub Tub family CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10018884 pacid=23144688 polypeptide=Lus10018884 locus=Lus10018884.g ID=Lus10018884.BGIv1.0 annot-version=v1.0 ATGTCGTTTCGTAGTATAGTTCGTGATGTTCGTGACGGGTTCGGGAGCTTATCCAGGAGGAGTTTCGACGTTAGGCTTCACGGTCACAATAGAGGGAAGT CTCATGGCTCGGTTACTGACTTACACGACCAACTAGTGGTGAGCCAGAGTAGCCGCCGTTGGGCTAGTCTCCCGCCAGAACTTTTACGCGATGTCATCAA GAGGTTGGAGGCCAGCGAGGGCACTTGGCCTTCTCGTAAGCACGTTGTTGCGTGTGCTGCTGTTTGCAAGGCGTGGCGAGAAATGTGTAAAGAGATTGTT CGATGCCCCGAATTCTCTGGGAAGATCACTTTCCCGGTTTCCTTGAAGCAGCCTGGCTATAGGGATGGGCCGATCCAGTGCTTCATTAAGCGAGACAAGT CGAAATTAACTTACCATCTATTCCTTTGCCTTAGCCCTGCATTGCTTGTCGAGAACGGGAAGTTCCTCCTCTCTGCTAAACGCACGAGAAGAACTACATG CACGGAGTACATAATCTCCATGGACGCCGATAACATTTCGAGATCGAGCGGAACATATATCGGAAAGCTAAGGTCGAATTTCCTCGGTACAAGATTCATA ATTTACGACACGCAACCGCCTTACAACAACGCTCAAATCTTGCCACCTGGACGAAGCAGCAGAAGGTTCTACTCGAAGAAAGTCTCACCCAAGGTCCCTA CTACTGGAAGCTACAACATCTCGCAAATCTCGTACGAGCTCAACGTGCTAGGGACGAGGGGTCCACGTAGGATGCACTGCACAATGCACTCAATCCCAAC TTCGTCCCTCGAGCCAGGCGGTTCCGTGCCGGGGCAGCCTGAGATCCTGCTCCCCGGATCGCTCGAGGACTCATTCCGGAGCAGCATGTCCGTTTCGAAA TCGATCATGGACAGCTCGAGCGAGTTCAGCAGCTCTCGATTCTTCGCTCCACGAGACAATAATCCTGATGGCGAGAATGAGAACAAGGAAAGGCCGCTGG TTTTACGAAACAAGGCGCCTAGGTGGCACGAGCAGTTACAATGCTGGTGCCTGAACTTTCGAGGGAGGGTAACCGTGGCGTCGGTGAAGAACTTCCAGCT GATCGCTGCGAGCCAGCCTACCGCTGGTGCTCCTACACCCTCGCAGCCAGTGCAATCGGATCACGATAAGATCATTCTGCAGTTTGGTAAGGTGGGGAAG GATATGTTCACCATGGATTACCGATATCCGCTGTCGGCATTTCAAGCTTTTGCTATATGCTTGAGCAGCTTTGACACTAAGCTTGCTTGTGAATAG
AA sequence Show only first row Show all	>Lus10018884 pacid=23144688 polypeptide=Lus10018884 locus=Lus10018884.g ID=Lus10018884.BGIv1.0 annot-version=v1.0 MSFRSIVRDVRDGFGSLSRRSFDVRLHGHNRGKSHGSVTDLHDQLVVSQSSRRWASLPPELLRDVIKRLEASEGTWPSRKHVVACAAVCKAWREMCKEIV RCPEFSGKITFPVSLKQPGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSGTYIGKLRSNFLGTRFI IYDTQPPYNNAQILPPGRSSRRFYSKKVSPKVPTTGSYNISQISYELNVLGTRGPRRMHCTMHSIPTSSLEPGGSVPGQPEILLPGSLEDSFRSSMSVSK SIMDSSSEFSSSRFFAPRDNNPDGENENKERPLVLRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAASQPTAGAPTPSQPVQSDHDKIILQFGKVGK DMFTMDYRYPLSAFQAFAICLSSFDTKLACE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Lus10018884 [exp]	0	1
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Lus10002826 [exp]	1.0	0.9465
AT3G04600			Nucleotidylyl transferase supe...		Lus10018331 [exp]	4.6	0.9245
AT5G13760			Plasma-membrane choline transp...		Lus10039585 [exp]	4.7	0.9327
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Lus10008421 [exp]	6.7	0.9027
AT1G19360		RRA3	reduced residual arabinose 3, ...		Lus10032710 [exp]	7.7	0.8939
AT3G63210		MARD1	MEDIATOR OF ABA-REGULATED DORM...		Lus10022060 [exp]	13.4	0.8985
AT2G31130			unknown protein		Lus10017672 [exp]	15.0	0.9091
AT3G16230			Predicted eukaryotic LigT (.1....		Lus10037578 [exp]	18.3	0.9008
AT1G19360		RRA3	reduced residual arabinose 3, ...		Lus10018812 [exp]	19.4	0.8808
AT5G02290		NAK	Protein kinase superfamily pro...		Lus10010835 [exp]	23.2	0.9138

Compare expression of checked genes

Lus10018884 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.