Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76870 325 / 1e-109 Trihelix unknown protein AT1G21200 267 / 5e-86 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G10040 201 / 7e-61 Trihelix sequence-specific DNA binding transcription factors (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028581 [exp] 595 / 0 AT1G21200 369 / 8e-126 sequence-specific DNA binding transcription factors (.1) Lus10029777 [exp] 411 / 2e-142 AT1G21200 503 / 9e-178 sequence-specific DNA binding transcription factors (.1) Lus10042805 [exp] 404 / 1e-139 AT1G21200 496 / 8e-175 sequence-specific DNA binding transcription factors (.1) Lus10008643 [exp] 184 / 1e-53 AT3G10040 325 / 5e-107 sequence-specific DNA binding transcription factors (.1) Lus10035582 [exp] 183 / 2e-53 AT3G10040 326 / 2e-107 sequence-specific DNA binding transcription factors (.1) Lus10002481 [exp] 40 / 0.0001 AT2G38250 91 / 4e-24 Homeodomain-like superfamily protein (.1) Lus10004806 [exp] 42 / 0.0004 AT5G01380 239 / 5e-77 Homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G068700 [exp] 307 / 2e-101 AT1G21200 445 / 1e-154 sequence-specific DNA binding transcription factors (.1) Potri.005G191700 [exp] 301 / 4e-99 AT1G21200 444 / 3e-154 sequence-specific DNA binding transcription factors (.1) Potri.001G019200 [exp] 230 / 1e-71 AT1G21200 212 / 1e-63 sequence-specific DNA binding transcription factors (.1) Potri.006G117500 [exp] 190 / 6e-56 AT3G10040 249 / 3e-77 sequence-specific DNA binding transcription factors (.1) Potri.003G204700 [exp] 186 / 9e-55 AT1G21200 212 / 1e-63 sequence-specific DNA binding transcription factors (.1) Potri.016G096300 [exp] 186 / 2e-54 AT3G10040 249 / 7e-78 sequence-specific DNA binding transcription factors (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018886 pacid=23144670 polypeptide=Lus10018886 locus=Lus10018886.g ID=Lus10018886.BGIv1.0 annot-version=v1.0 ATGGAGGGCAATGCATCACAAGGAGGCATGATATCTCGTGTCCCTCCTTTCGTCGATTTACAAGGATCGATGACGAGAGTTCATCATCACCAAGCACAAC AACATCCTGAGGGGTTTGCACTCACTATGGGGAGAGCGAAGAACCCGAATCATAGTGATGATGACAACGATGACGATGATGATGAGTTGAATCGAACAAA GAAGGGTTCTTTGTCATCCTCTTCGCATTGGCAACGAGTGAAGTGGACGGAAACCATGGTCAAACTCTTGATAACTGCTGTGTCTTACATAGGAGAAGAA GGTTCAGATTGTTGTGGTGGGAATGGTAAGAAGAGAACTTTTGTGGCTCTACAGAAGAAAGGGAAGTGGAAGTCGGTTTCAAAAGCCATGTCCGAGAGAG GCTTTCTCGTGTCTCCGCAGCAGTGCGAGGATAAGTTCAACGATCTGAACAAACGGTACAAGAAGCTGAACGACATCATCGGGAGAGGCACTTCTTGCCA GGTTGTCGAAAATCCTGCTCTCCTCGATGTCATTGATTATCTCTCCGAGAAGGAGAAGGGCGATGTTCGGAAGATACTTAACTCGAAGCATTTATTCTAC GAGGAGATGTGTTCGTACCATAACGGGAATAGGCTTCATCTGCCTCATGATCCTGCGTTGCAGCGGTCGTTGCAGCTGGCTCTTAAGAGCAGTCGTGGGA ATGACGATTTCGATGATGTGGATGATGACGAGGATGATGATGAGGATGATGACGAGGATGGTGACGAGGTTGGTGGTGATTGTGATGGAAAGAGGTTAAG GCAAGAAGATGTTGACATGAACCGAGCGTGTCATGAAATGAGTTCGAAAGGAGGCTTGGTGCAGAAGGATTGGATCGAGTCTCGTACACTGCAGTTAGAG GAAGAGCGGCTGCAGATCGAAGTGGAGAATCTGGAGCTGGAGAAGGAGCGGTTCAGGTGGCAGAGGTTTAGTAGGAAAAGAGATCAGGAATTGGAGAAGT TGAAGATGGAGAATGAGAGAATGAAGCTTGAGAATGAACGGATGAAGCTCGAATTAAAGTGTAAGGTAATGAGTGCTGATTTCAGCTGA
AA sequence Show only first row Show all	>Lus10018886 pacid=23144670 polypeptide=Lus10018886 locus=Lus10018886.g ID=Lus10018886.BGIv1.0 annot-version=v1.0 MEGNASQGGMISRVPPFVDLQGSMTRVHHHQAQQHPEGFALTMGRAKNPNHSDDDNDDDDDELNRTKKGSLSSSSHWQRVKWTETMVKLLITAVSYIGEE GSDCCGGNGKKRTFVALQKKGKWKSVSKAMSERGFLVSPQQCEDKFNDLNKRYKKLNDIIGRGTSCQVVENPALLDVIDYLSEKEKGDVRKILNSKHLFY EEMCSYHNGNRLHLPHDPALQRSLQLALKSSRGNDDFDDVDDDEDDDEDDDEDGDEVGGDCDGKRLRQEDVDMNRACHEMSSKGGLVQKDWIESRTLQLE EERLQIEVENLELEKERFRWQRFSRKRDQELEKLKMENERMKLENERMKLELKCKVMSADFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10018886 [exp]	0	1
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10028581 [exp]	1.0	0.9565
AT3G20870		ZTP29	zinc transporter 29, ZIP metal...		Lus10031836 [exp]	4.8	0.8998
AT3G45310			Cysteine proteinases superfami...		Lus10034895 [exp]	4.9	0.9253
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039425 [exp]	5.5	0.9195
AT1G14740			Protein of unknown function (D...		Lus10030769 [exp]	5.7	0.9259
AT3G55920			Cyclophilin-like peptidyl-prol...		Lus10030408 [exp]	6.3	0.9017
AT2G16720	MYB	AtY49, AtMYB7	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10028435 [exp]	6.9	0.9160
AT3G12550		FDM3	factor of DNA methylation 3, X...		Lus10000948 [exp]	7.3	0.9142
					Lus10021189 [exp]	7.3	0.9039
AT4G27040		VPS22	EAP30/Vps36 family protein (.1...		Lus10004047 [exp]	8.1	0.9074

Compare expression of checked genes

Lus10018886 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.