Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76880 191 / 1e-52 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT1G76890 178 / 2e-48 Trihelix AT-GT2, GT2 Duplicated homeodomain-like superfamily protein (.2) AT1G33240 156 / 4e-40 Trihelix AT-GTL2, AT-GTL1 GT2-LIKE 1, GT-2-like 1 (.1) AT5G03680 122 / 7e-29 Trihelix PTL PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) AT5G28300 119 / 4e-28 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT3G10000 117 / 9e-28 Trihelix EDA31 embryo sac development arrest 31, Homeodomain-like superfamily protein (.1.2) AT5G47660 100 / 1e-22 Trihelix Homeodomain-like superfamily protein (.1) AT3G25990 66 / 3e-11 Trihelix Homeodomain-like superfamily protein (.1) AT1G13450 62 / 2e-10 Trihelix GT-1 GT-1, Homeodomain-like superfamily protein (.1.2.3) AT5G01380 52 / 5e-07 Trihelix Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029778 [exp] 186 / 2e-50 AT1G76890 311 / 3e-96 Duplicated homeodomain-like superfamily protein (.2) Lus10042806 [exp] 181 / 6e-49 AT1G76890 337 / 9e-108 Duplicated homeodomain-like superfamily protein (.2) Lus10028584 [exp] 171 / 2e-46 AT1G76880 262 / 5e-81 Duplicated homeodomain-like superfamily protein (.1) Lus10028582 [exp] 166 / 7e-46 AT1G76880 219 / 2e-66 Duplicated homeodomain-like superfamily protein (.1) Lus10018888 [exp] 169 / 8e-45 AT1G76880 360 / 2e-117 Duplicated homeodomain-like superfamily protein (.1) Lus10033504 [exp] 150 / 3e-39 AT1G76890 323 / 8e-105 Duplicated homeodomain-like superfamily protein (.2) Lus10020873 [exp] 145 / 3e-37 AT1G76890 320 / 2e-103 Duplicated homeodomain-like superfamily protein (.2) Lus10028583 [exp] 133 / 2e-36 AT1G76880 125 / 3e-34 Duplicated homeodomain-like superfamily protein (.1) Lus10027718 [exp] 120 / 4e-29 AT5G03680 297 / 3e-95 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G068600 [exp] 191 / 7e-53 AT1G76880 441 / 3e-148 Duplicated homeodomain-like superfamily protein (.1) Potri.002G068400 [exp] 179 / 2e-48 AT1G76890 387 / 1e-127 Duplicated homeodomain-like superfamily protein (.2) Potri.005G192000 [exp] 169 / 4e-45 AT1G76890 392 / 6e-130 Duplicated homeodomain-like superfamily protein (.2) Potri.001G309100 [exp] 167 / 5e-45 AT1G76880 350 / 2e-114 Duplicated homeodomain-like superfamily protein (.1) Potri.005G191900 [exp] 164 / 2e-44 AT1G76890 216 / 2e-64 Duplicated homeodomain-like superfamily protein (.2) Potri.019G010200 [exp] 164 / 9e-44 AT1G76890 219 / 1e-64 Duplicated homeodomain-like superfamily protein (.2) Potri.001G454500 [exp] 166 / 4e-43 AT1G33240 186 / 1e-49 GT2-LIKE 1, GT-2-like 1 (.1) Potri.011G147400 [exp] 162 / 8e-42 AT1G33240 181 / 5e-48 GT2-LIKE 1, GT-2-like 1 (.1) Potri.018G049500 [exp] 133 / 2e-34 AT1G76890 158 / 5e-44 Duplicated homeodomain-like superfamily protein (.2) Potri.018G049700 [exp] 132 / 2e-32 AT1G76890 148 / 5e-38 Duplicated homeodomain-like superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018887 pacid=23144634 polypeptide=Lus10018887 locus=Lus10018887.g ID=Lus10018887.BGIv1.0 annot-version=v1.0 ATGCTAGTGGACTCCGCTACTGACGGAGGCGGCGGCGGCGCCGAAAGGACCCGCACCGCGCCCCTCGCCGCCCCCCCCCCCCCCCCCGCCACTCCTCCTC ACTTCCACCAGCACCAGCACCAGCACCAGCACCAGCACCAGCAGCATCAATTATCGAGTAATCCTCCGATTAATTCATCAGCAGCTCAGTTTTCAGCTCC GGCGGCGGCTGATGCTGGACAGCATGTCGGCTCGAGCTCAGGCGGCGAGGAAGACAGATTCGGCGGTGGAAGCGGCGGGAATCGGTGGCCGCGGCAGGAG ACGGTGGCTCTGCTTCGGATAAGGACGGATATGGACGCGACGTTTCGGGACGCCAGTGTGAAAGGACCTCTCTGGGATGACGTTTCCAGGAAAATGGCGG AGCTTGGATACCATCGAAGCTCGAAGAAATGCAAAGAGAAATTTGAGAACGTTTACAAGTACCACAAACGGACTAAAGACGGCCGCACCGCCAAACACGA CGGCAAAACCTACCGTTTCTTCCAAGAGCTCGAAGCCTTCGACAGCCATCTCTCCCCGCCCGGAGCTCCTCCAGCGCCGACGCAGCAGCACAAGCAGCCG GGCATCCAGTTACAAATTCCAGCAGTAAATCCAACTCCTCTGCCTCCTCCGACAACTGTTCCATCGACAGCAGCCGTCCTCCCGCCGCATACTCCGTCCG CGATCAACACCGCCACCCCCGCAACCACCACACCGGCAGCAGTGGCAACTTCGCTTCCTCCTCAATCGACGAACCAGCAGCAGCATCAGAATCCGCCGTC GTTTTCAGATCTGATGTCGAATTCGAACTCGACATCGTCGTCGACCTCAACTTCGTCGGAGGCGGAGATCCACGGAGGCGGCAGGAGCAAGAGGAAGCGG AAGTGGCAGGACTTGTTCGAGCGGCTGATGACGGAGGTGGTGAATAAGCAGGAGGAGATGCAGAGGAAGTTTCTGGAAGCAATCGAGAAGCGGGAGAAGG AGCGGATCTCTACAGAAGAGTACTGGAGAAACCAGGAGATGGCTCGGATCAATCGAGAACGAGAGATCCTAGCTCAGGAGAGATCCATCGCCGCCTCTAA AGACGCCGCCGTCATGTCCTTCCTCCAGAAGATCTCCGATCAGCACCAGATCCCGATCCCGATCGCCGTCTCCGCGCCTCCTCCTGCTCCGCCGCCGCAG CAGCCACCGCCTGTTCAGCTTCCTCAAGTCATCCAAGCCAATACTCCTCCACCACCGCCGCCGCAGCCTCAGCAGCCTCCACTGCCTCCGTCTACAACGA CAACGACATCATTAGCTCCTCTGCCACTGCAATTAACGGCAGAAACAGAGCATCAAGTACGGAATCAACCTCAATCAGAGAGTGTGAGCTCGTCTCGATG GCCGAAGGTCGAAATCGAAGCGCTGATCGATCTGAGGAAGAATCTGGACTCGAAGTATCAAGAGAACGGCCCCAAGGGGCCGTTGTGGGAGGAGATATCG GCGAGGATGAAGAGAATCGGTTACAACAAGAGCGCCAAGAGGTGCAAGGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAGGTGAAGGAGAGCAACA AGAAGCGGCCCGAGGATTCAAAAACGTGTCCGTATTTCCACCAATTGGATGCATTGTACAGGGAGAGACAGAGCAATTCGGTCCCGATCCTCGTCCAGCC CGAGCAACAATGGCCTCCACAACCACAAGTTGATGCGGCTGCTTCGCAACCGACCCCACCACCGCTGCATCCGATCCATCAGCAGCACAGACCGGATGCG GCGATGGAGGATATGGAGAGCGAGGACGATGAGGAAGATGATGATGAAGAGGAAGGCGACGATGATCATGATGGTGGTGGTGGTTACGAACTCGTCTCGA ATAAGGCGACATCGATGAACATGTGA
AA sequence Show only first row Show all	>Lus10018887 pacid=23144634 polypeptide=Lus10018887 locus=Lus10018887.g ID=Lus10018887.BGIv1.0 annot-version=v1.0 MLVDSATDGGGGGAERTRTAPLAAPPPPPATPPHFHQHQHQHQHQHQQHQLSSNPPINSSAAQFSAPAAADAGQHVGSSSGGEEDRFGGGSGGNRWPRQE TVALLRIRTDMDATFRDASVKGPLWDDVSRKMAELGYHRSSKKCKEKFENVYKYHKRTKDGRTAKHDGKTYRFFQELEAFDSHLSPPGAPPAPTQQHKQP GIQLQIPAVNPTPLPPPTTVPSTAAVLPPHTPSAINTATPATTTPAAVATSLPPQSTNQQQHQNPPSFSDLMSNSNSTSSSTSTSSEAEIHGGGRSKRKR KWQDLFERLMTEVVNKQEEMQRKFLEAIEKREKERISTEEYWRNQEMARINREREILAQERSIAASKDAAVMSFLQKISDQHQIPIPIAVSAPPPAPPPQ QPPPVQLPQVIQANTPPPPPPQPQQPPLPPSTTTTTSLAPLPLQLTAETEHQVRNQPQSESVSSSRWPKVEIEALIDLRKNLDSKYQENGPKGPLWEEIS ARMKRIGYNKSAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYRERQSNSVPILVQPEQQWPPQPQVDAAASQPTPPPLHPIHQQHRPDA AMEDMESEDDEEDDDEEEGDDDHDGGGGYELVSNKATSMNM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10018887 [exp]	0	1
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10023995 [exp]	1.0	0.9298
AT2G42380	bZIP	ATBZIP34	Basic-leucine zipper (bZIP) tr...		Lus10017656 [exp]	3.5	0.8815
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10026345 [exp]	5.3	0.8879
AT1G21000			PLATZ transcription factor fam...		Lus10027735 [exp]	5.5	0.8948
AT1G47740			PPPDE putative thiol peptidase...		Lus10040485 [exp]	5.9	0.8818
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10029778 [exp]	6.0	0.8672
AT3G28180		ATCSLC4, CSLC4,...	CELLULOSE-SYNTHASE LIKE C4, Ce...		Lus10039440 [exp]	6.3	0.9010
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10038273 [exp]	7.5	0.8812
AT4G25420		AT2301, GA5, AT...	GA REQUIRING 5, ARABIDOPSIS TH...		Lus10027399 [exp]	9.5	0.7870
AT1G45130		BGAL5	beta-galactosidase 5 (.1)		Lus10024292 [exp]	10.2	0.8385

Compare expression of checked genes

Lus10018887 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.