Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76880 234 / 3e-69 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT1G76890 223 / 4e-65 Trihelix AT-GT2, GT2 Duplicated homeodomain-like superfamily protein (.2) AT1G33240 158 / 3e-41 Trihelix AT-GTL2, AT-GTL1 GT2-LIKE 1, GT-2-like 1 (.1) AT5G28300 142 / 6e-36 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT5G03680 102 / 1e-22 Trihelix PTL PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) AT3G10000 98 / 2e-21 Trihelix EDA31 embryo sac development arrest 31, Homeodomain-like superfamily protein (.1.2) AT5G47660 96 / 3e-21 Trihelix Homeodomain-like superfamily protein (.1) AT3G25990 65 / 6e-11 Trihelix Homeodomain-like superfamily protein (.1) AT1G13450 61 / 5e-10 Trihelix GT-1 GT-1, Homeodomain-like superfamily protein (.1.2.3) AT5G01380 47 / 3e-05 Trihelix Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028584 [exp] 541 / 0 AT1G76880 262 / 5e-81 Duplicated homeodomain-like superfamily protein (.1) Lus10033504 [exp] 207 / 3e-60 AT1G76890 323 / 8e-105 Duplicated homeodomain-like superfamily protein (.2) Lus10020873 [exp] 182 / 6e-51 AT1G76890 320 / 2e-103 Duplicated homeodomain-like superfamily protein (.2) Lus10029778 [exp] 170 / 3e-45 AT1G76890 311 / 3e-96 Duplicated homeodomain-like superfamily protein (.2) Lus10018887 [exp] 168 / 8e-45 AT1G76880 451 / 1e-151 Duplicated homeodomain-like superfamily protein (.1) Lus10042806 [exp] 165 / 1e-43 AT1G76890 337 / 9e-108 Duplicated homeodomain-like superfamily protein (.2) Lus10028582 [exp] 134 / 1e-34 AT1G76880 219 / 2e-66 Duplicated homeodomain-like superfamily protein (.1) Lus10028583 [exp] 108 / 1e-27 AT1G76880 125 / 3e-34 Duplicated homeodomain-like superfamily protein (.1) Lus10038779 [exp] 110 / 6e-26 AT5G47660 171 / 5e-49 Homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G068400 [exp] 258 / 3e-78 AT1G76890 387 / 1e-127 Duplicated homeodomain-like superfamily protein (.2) Potri.005G192000 [exp] 249 / 9e-75 AT1G76890 392 / 6e-130 Duplicated homeodomain-like superfamily protein (.2) Potri.002G068600 [exp] 236 / 1e-69 AT1G76880 441 / 3e-148 Duplicated homeodomain-like superfamily protein (.1) Potri.001G309100 [exp] 226 / 4e-67 AT1G76880 350 / 2e-114 Duplicated homeodomain-like superfamily protein (.1) Potri.019G010200 [exp] 225 / 1e-66 AT1G76890 219 / 1e-64 Duplicated homeodomain-like superfamily protein (.2) Potri.018G049500 [exp] 160 / 3e-44 AT1G76890 158 / 5e-44 Duplicated homeodomain-like superfamily protein (.2) Potri.018G049301 [exp] 158 / 3e-42 AT1G76890 158 / 2e-42 Duplicated homeodomain-like superfamily protein (.2) Potri.001G454500 [exp] 161 / 7e-42 AT1G33240 186 / 1e-49 GT2-LIKE 1, GT-2-like 1 (.1) Potri.018G049700 [exp] 159 / 1e-41 AT1G76890 148 / 5e-38 Duplicated homeodomain-like superfamily protein (.2) Potri.011G147400 [exp] 157 / 2e-40 AT1G33240 181 / 5e-48 GT2-LIKE 1, GT-2-like 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018888 pacid=23144723 polypeptide=Lus10018888 locus=Lus10018888.g ID=Lus10018888.BGIv1.0 annot-version=v1.0 ATGGACTCGATCTTCCGTGACTCGACCCCGAAAGCTCCGCTGTGGGAAGAAGTTTCCAGGAAATTGGGTGAGCTGGGGTACAAAAGAAGCGCCAAGAAAT GCAAAGAGAAGTTTGAGAATGTGTACAAGTACCACAAGAGGACCAAAGACGGCCGGACAGCTAAGCACGACGGCAAGAGCTACCGTTTCTTCCAAGAATT GGAAGCCTTCGACGGCCAGCAACAGGCCGTCGTCATCCAGAAAAAGAATCACCACCACCAACAACTTCCTCCACCACCTCCGGCATTGCCATGGGGCACG GCGGTAACTTCACATCAAATAATGGGTACTATTCCATCGGGTGGTGGTAATAATAATGGTACTAGTACTACACCGGTGAATGGTACTAGTACACCGGCGG CTAATAATACTACTATGTCTATTAACTTCACCATCATGCCACCTAATCATCATCAACATCAGCAGAGCCATCTTAGTCCGACGGTGGTTACACCGGCTGA GCCGATCTCATCATCTCAGCCGTTGAATCCGAGCCCTCAGAGCGTGTTCCACCCTTCTTACCACCATCACCGGGGTCAGCATCATAATGGTCATCATGGG CATCGTACTGTTTCTGTTACGGCGCACTTGTTCTCGAGCTCCACCTCCTCGTCGACTGATTCTGACGAACAGATGGAGGAAAAGGGGATGAAGTCGAGAA AGAGGAAGAGGAAGCTGAAGGATTTCTTCCATAGGTTGACGAAGGATGTTATAAAGAAACAGGAGGAACTGCAGAAGAGGTTTTTGGAAACGGTCGAGAA GCTGGATCGCGAGCGGCTTGATCGTGAAGGGGCGTGGCGGGTTCAGGAGATGGCTAGGATCAACCGTGAGCATGAGATTCTTATTCAAGAGCGGTCCACT GCAGCGGCTAAGGATGCTGCTGTTTTGGCGCTCCTCCAGAAAGTTTCTCAAGGAAGTGTTGGAGGAGCACAAATCGACCCTCCAAAAGTCTCATTATCAT CTCCACCGCCTCCTATTCCATCGCAATCGACATTAGTATTGCAGAACCATCCAACTCATGTTGTGGCGCAAAAGCAAAAGCCTGCTCCAATAACGACAAA TGTTGGAGGAAGGATAGAGAGTAACGGGGAAGGCGTGCATACAATAGCGACGACAACCACAACTCCCTCGTCTAGGTGGCCGAAAACGGAGGTACTCGCT CTAATAGGACTAAGAACGAGGTTAGACGAGAAATATCAAGAAAACGTACCAAAAGGGCCGTTATGGGAAGAGATATCTATCGAGATGATGAAATTAGGGT ACAACCGGAACGCAAAGAGGTGTAAAGAAAAATGGGAGAACATCAACAAATACTTCAAAAAAGTGAAGGAAAGTAGTAGGAAGAGGCCGGAGGACTCGAA GACTTGTCCATATTTCCATCAATTGGATGCATTGTATAGGGAGAAGAGCAAGGTAATTGAGCAACCAATCAACAACTCTACAATCAATAGTGACACCGGC TACATAGAGGCTAACCCAATCAGGGCGGTGGAGCCCACAACAACGATACATCATTGGCTATCGCCTCCACCTCCACCACCTTCTCACCATGCACCAGAAG AAGAGGAGGATGAAGACAAAGAGGACGAGGACGATTACGAGGATGAAGAAACCGACGAAGATGTCGAAAACAGTGTTAGAGGGTTCGAGATTGTACATAA CAAACCGGCCATGGCGGTCGGAGGCAATGGTGAATAA
AA sequence Show only first row Show all	>Lus10018888 pacid=23144723 polypeptide=Lus10018888 locus=Lus10018888.g ID=Lus10018888.BGIv1.0 annot-version=v1.0 MDSIFRDSTPKAPLWEEVSRKLGELGYKRSAKKCKEKFENVYKYHKRTKDGRTAKHDGKSYRFFQELEAFDGQQQAVVIQKKNHHHQQLPPPPPALPWGT AVTSHQIMGTIPSGGGNNNGTSTTPVNGTSTPAANNTTMSINFTIMPPNHHQHQQSHLSPTVVTPAEPISSSQPLNPSPQSVFHPSYHHHRGQHHNGHHG HRTVSVTAHLFSSSTSSSTDSDEQMEEKGMKSRKRKRKLKDFFHRLTKDVIKKQEELQKRFLETVEKLDRERLDREGAWRVQEMARINREHEILIQERST AAAKDAAVLALLQKVSQGSVGGAQIDPPKVSLSSPPPPIPSQSTLVLQNHPTHVVAQKQKPAPITTNVGGRIESNGEGVHTIATTTTTPSSRWPKTEVLA LIGLRTRLDEKYQENVPKGPLWEEISIEMMKLGYNRNAKRCKEKWENINKYFKKVKESSRKRPEDSKTCPYFHQLDALYREKSKVIEQPINNSTINSDTG YIEANPIRAVEPTTTIHHWLSPPPPPPSHHAPEEEEDEDKEDEDDYEDEETDEDVENSVRGFEIVHNKPAMAVGGNGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10018888 [exp]	0	1
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10028584 [exp]	1.0	0.9577
AT1G13245		RTFL17, DVL4	DEVIL 4, ROTUNDIFOLIA like 17 ...		Lus10041491 [exp]	1.7	0.9398
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10036243 [exp]	4.0	0.9402
AT4G32140			EamA-like transporter family (...		Lus10041032 [exp]	4.0	0.9254
AT2G39130			Transmembrane amino acid trans...		Lus10039190 [exp]	4.5	0.9249
AT1G36310			S-adenosyl-L-methionine-depend...		Lus10040430 [exp]	5.7	0.9222
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10038383 [exp]	6.9	0.9235
AT5G09430			alpha/beta-Hydrolases superfam...		Lus10033451 [exp]	7.3	0.9205
AT4G09890			Protein of unknown function (D...		Lus10006799 [exp]	8.5	0.9149
AT4G40010		SNRK2-7, SNRK2....	SUCROSE NONFERMENTING 1-RELATE...		Lus10037685 [exp]	11.0	0.8964

Compare expression of checked genes

Lus10018888 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.